RNA id: AMCG00006502


Basic Information

Item Value
RNA id AMCG00006502
length 5407
RNA type mRNA
GC content 0.49
exon number 13
gene id AMCG00006502
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6754781 ~ 6768791 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTTGCAAAAGCATTACTTTACATCTACTTTCTGAACCCAAAGCTCTCTCAGCAGTTTCTGAAAGCGTGcatcaacacaacacactgctgCGCAACAACTGTGCCAGGGCAATGCCAGTGCATAGTGCGTGTAGAAATATCTTTCTTTAATAAGACGGTGTGCACAGATCGTAattctgataataataataaaagtgacgAAGACTGCTGTGCGCGGAGTGACTGGAGAGCGACGCGATTGGCCGGCGTGCTGCTGGCGGTGCGCAGGCTCGGTGCGCCTGTGCGCGGCGTGCTGCGTGCTGCGTGGCGGGTGGGACCTCCAGCCGCCGCATTGTTGTTGGGGGAGAGAGGAGCGCTGGGCAGCTGCTGTTCGGCACTGGCAAGCGGACGACCTCGGTTTCCGAATGGTCCTTTTCCGTGCTCACTGCCCGCCGAGGACCGACCCGCGATACACACCCGCCCGGCTGCGGTGGCGACGCCCGAGCGCGGAGAGCTGAGCGGCGGCGAGCCCGAGCGGCGGCCGTTGGACGAGAGAGTGCGGAATCACAGCCGCTCCGCAGGCCACAGCGCCATTGCTGCTGCGAGCGCCGCCGTCTTGGGGGGAGCCGAGACCCGTGGGACTGCGAGGTTTAAGGTGTCCAATatgaggaggaagagcaggCATCATCGAGTGTCAACAGCCAAACGGTCCACCTCGCCCTGTAACATCAAGCACTCCCCGACGCGGGAGACTCTGACATACGCGCAAGCCCAGCGAATGGTTGAGATGGAGATTGATGGCCGCCTGCACAGAATAAGTATTTTCGACACGTTAGAGATCATATCGGAAGATGACCTCACTGCCCAAGAGCTGAGCGAGTGTAATAGCAATAAAGAGAACAGCGAGAGACCACAGATACTGGTGAGATCcaaaagactgaaaaacaaCCTCAAAAAGAAGAACGCCGCACTGCTAAACGCACATGGGGTGCAGGCGTCTGGAAGCTCCCTCCCGGAACCCAAAATCCGCATTGTGGAGTATAACCCCCCGCCGGCCCCTCGGCGACCTCCCTCGTATTACACGTTCGTCGAGAAGTCCCCGGACGAGCTCGACAAAGAGGTTGAGTATGATATGGACGAGGAAGACTACGCCTGGTTGGAGCTGGTGAACGAGAAGCGGAGAAGTGAGGGCTTGAGCGCCGTCTCTCAGAACGTCTTCGAGTTCCTCATGGACCGGTTCGAGAAGGAGTCCTTCTTCGAGAGCCAGAACCAGGGGGACCCCCAGTCCCTCATCGACGAGGACGCGGTGTGCTGCATATGCATGGACGGCGAGTGCCAGAACAGCAATGTCATCCTGTTCTGTGACATGTGCAACCTGGCCGTGCACCAGGAGTGTTACGGAGTGCCATACATCCCCGAGGGCCAGTGGCTCTGCAGACATTGCTTACAGTCCCCCTCCCAGCCTGTGGACTGTGTGCTCTGCCCCAATAAGGGCGGGGCTTTTAAAAAGACGGACGATGATCGCTGGGGACACGTGGTCTGCGCCCTGTGGGTACCTGAGGTGGGCTTTGCAAACACGGTATTTATCGAGCCCATCGATGGCGTGAGGAACATCCCCCCAGCTAGGTGGAAACTGACGTGCTACCTCTGTAAAGAGAAGGGCGTCGGCGCTTGCATCCAGTGCCACCGAGCAAATTGTTACACGGCGTTTCACGTGAGTTGTGCTCAAAAGGCAGGCCTGTACATGAAAATGGAGCCCGTGAGGGAGGTCACGGACACTGCCACGACGTTTTCGGTCAAGAAAACGGCCTACTGTGATGCCCACACGCCGCCGGGCTGCGTCAGGAGGCCTTTGACGATCTACGAAGAAGCCAAAACCAAAAACGGACTTTGTcagaagggggagaaaaaaagtggAAGGACAAGATTAAAAGGcagacaaagaaataaaaagagtaAGAAAGCTCTAGCTGAACCTTTGGCAGCTGTTCCAACCGTATCTGTACCCAGTATTCCTCCTCAAaggttaaACAAAATTCTCAATCAAGTTGCTGTTCAGAGGAAGAAGCTTTTCATCGAGCGGATATTGAATTACTGGACACTGAAGAGACAGTCCAGGAATGGCGTGCCACTGCTGAGACGCTTACAGTCCAGCCTGCAGTCACAGAGAAACACGCAGCAGCGAGAGAACGACGAAGAAAGCCGCGTACTGAAAGAGCAGCTGAAGTGCTGGCACCGGCTGCGGCACGACCTGGAGAGAGCTCGGCTGCTGGTGGAACTGATCCGCAAGCGGGAGAAGTTAAAAAGAGAAGAGATTAAAGTCCATCAGGTTGCTCTGGAGCTGCAGCTGACCCCTTTCACAGTCCTCCTGCGCTCAGTCCTCgagcagctgcaggagaaggACACTTCCAAGATATTTGCCCAGCCAGTGAGCCTTAAAGAGGTTCCGGATTACTTGGACCACATCAAACAGCCCATGGACTTCTCCACCATGAGGAAGCGCATTGAATCGCACGGATATAAGAACCTGGACGAGTTCGAGGAGGATTTCAACCTCATTATCGAGAACTGTATGAAGTACAATGCGAAAGAGACGATCTTCTACAGGGCTGCCGTCCGCTTGAGAGATCAGGGAGGGGCTGTGTTGAGGCAGAGCCGGCGTGAAGCTGAATGTATAGGATTCGATTATGAAACTGGAATGCACTTGCCTGAACCACCAAAGATTGAACCACCACCGCCTTTTTCTTGGGAAGATGTGGATCGGCTACTGATTCCAGCAAACCGAGAGCACATGCCTTTAGAGCAACAGCTTCAAGAGCTCCTGGAGAAACTTGACCTGACGAGTGCGATGAAATCAAGTGCTTCGCGGAATAAGCGCACCAAGCTGTTGAAAAAAGAAATCGCCAACGTACGATATGAGATCAGCCTGGCGAAGACTCAGACTCAGGCCCCACATCTGCAGACCAATAAACCGCCTGTCGAAGAGGTCGCGCCCGCAGGACAAAATACAGAGGATgatgGAGACAAGTCGCTACCACCAAAGCTAGAACCATCGGACTCTTTGCTGCCTCCTCTAAATTCTGACAGTAATTCAGAACCGCCCACACTCAAACCCATCGACCCCAGCCCCGAGAACAATAAGTTGCACAAACGGGTCAAGTTTGACAGCGAGACATGTCCCAGCCCCCCTCCGAAGGAAATATTAATAAACGGGCACGCTCCGGAGCACCTGCTGGCAAACAGCGATGTCAGTGTGGTGGCCACCTCGACGTTGGCAGACTCCTCGAGCGACGTCAACAGGCGGACTTCCGTACTTTTTCGAAAATCTAAAAGTGTAAGTCCACAAAAACCTGGGAAAATCGGTGACGCGCAGCCGAGTTCTCCGCAGCTAGGAACCAAAACGTTTTTGTCTGTGGTTATTCCAAGATTGGAGACTCTTCTCCAGCCAAGGAAGAGGTCCCGGAGTGCTTGTGGAGAAAGTGAAGGAGAAGAGGAATCCCCGGTGAAGCGCTTTGACACGGGGCTCTCTAATGGGTTTGGCAATGAGGAACACAAAGAACTCAATCCGGCCAAAAAACTAGAACCCCGTCGCCGATGTGCCTCCGAATCGAGTATCTCCTCAAGTGGCAGCCTCTTATGCAACACAAGTTTCAGCCTTCCAAAGTGTGGCAAAGGAAAACCAGCCCTTGTACGCAGGAATACCATTGAAGACAAAAATGAGTTAATAGCTTGTATCGAAACTGGAAACTTTGCCAAAGCTGCACGGATTGCGGCAGAAGTTGGCAACAGCAATATCTGGATGCCTGCTAGTGCTGCAACTGTTGTTCTGGAACCTCTTAAACTAGTTTGGGCAAAATGTAGTGGATACCCATCCTACCCTGCCCTGaTAATAGATCCAAAAATGCCTCGTGTTGGTTGCCACCATAACGGGGTGTCAATACCAATACCTCCTATGGATGTCCTTAGGATAGGTGAACAAATGCAGTATAAGTCAGAAGAGAAGCTCTTCCTTGTTCTCTTTTTCGACAACAAAAGGAGCTGGCAATGGCTTCCTAAATCAAAAATGGTTCCCCTGGGAATCGACAAGACCATCGACAAGATCAAAATGATGGAGGGCCGGACCTCGAGCGTCCGCAAAGCCGTGAGGACCGCCTTCGAGCGCGCCATGAGCCACCTGAGCCGAGTGCAGGGCGAGCCGGCCAGCGACTTCAGCGACGTCGACTGAGCCGGCGCTCCCCAGCCGCCAGCCCACCTCGCCTGCTCTGCTTTACGAGCTGATCGCTGTTACTTGATGAATGTGCTAGAGTCTATATTCCTCGATTTCCCTCGATTCAGAAGCTGTTCTGCCAAGGACGAGTCACTCGAACGCTCACTGCCATATTGAATCAAGACATTGCCCATAACTCACGATACAAAGAGCTTTCCACCTTTTGGATATTAATGTAgttctatatttaataaaatttgTAAATAGATGTATAATGCCTGAAGCTTTAACTTATTCTGTagattttttggtttattttataaattggtacagtaccttgcttttcctaatatttatactttaaaataatgtacagcCGCACTATCATCTGGTCTTTACTGGTGCTATACACATTGTAAAATCCTAGTTTTACGTTAAAGACTGAAATAGGGCTATAAGATACTGTATTCAAcgtcatttcattttttttttttttaaatcgacTAAGTTATTGAAGTTTATCTACATAAGCTTCCCCTCCtggcattatttttttttttcctttttaaataaatatatataaattagaatGTTTTTATGagaattttactttttgtttgtatatatttatataaatctatatatctGTAAAACGGAAATGCTTCACTGGGAAAGCTTTAGTAGATACGAGAAACCCGAAGTACATAATTTTCATGACACCAAAAAGTTTGCTGCccagactttttttatttttatttctgtctgtatAGCGTGTAATGTATTTCATGAACTgtattgccttttatttttttatatattttttgtctgttacTGGGACCTGTGTTTGAACTTTTGAAGATGTGcctgattgtttttatttattgtgaaagtATATGCATTACTTTATATACAAACTGAGACATTGAAAGTGGTATAATGTTTGTAGGCACATTTAGAAACTAGTTTAGGTGAAATACTGGGGTTTTGTGTATAAATTACTGTAATCAGATTTTCATATCCTGTAATTTTGACAGTTGAGCTGTAGAGTTTGtgatatttgttcatttatttaggAACCTGGGTAGCTATAGactttttgaatacattttgtatggtATGTGTTATGTACATAGATTttagtatgatttattttattttattttatttggggaCAAGAAAAGCATTAGGTGAAGATATGGGTGGGTTTCCagtttccaga

Function

GO: NA

KEGG:

id description
K11349 BRD1, BRPF2; bromodomain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137753 lncRNA downstream 899279 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 950329 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 951520 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 1174054 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 1319017 5434937 ~ 5435764 (-) True G109916
TU137917 lncRNA upstream 51447 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 143085 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 168622 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 175396 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 337790 7106581 ~ 7107138 (-) False G110195
AMCG00006498 mRNA downstream 537273 6191972 ~ 6217508 (-) True AMCG00006498
AMCG00006496 mRNA downstream 657638 6091225 ~ 6097143 (-) True AMCG00006496
AMCG00006493 mRNA downstream 686787 6051327 ~ 6067994 (-) True AMCG00006493
AMCG00006491 mRNA downstream 711857 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006490 mRNA downstream 753631 5994814 ~ 6001150 (-) True AMCG00006490
AMCG00006503 mRNA upstream 9576 6778367 ~ 6779464 (-) True AMCG00006503
AMCG00006506 mRNA upstream 86945 6855736 ~ 6860515 (-) True AMCG00006506
AMCG00006507 mRNA upstream 228756 6997547 ~ 7004873 (-) True AMCG00006507
AMCG00006513 mRNA upstream 309529 7078320 ~ 7089125 (-) True AMCG00006513
AMCG00006512 mRNA upstream 329792 7098583 ~ 7106776 (-) True AMCG00006512
TU137807 other downstream 737838 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 2589181 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 4424790 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 4624526 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 4730638 2020001 ~ 2024143 (-) True AMCG00006313
TU137903 other upstream 16522 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 309598 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 1953597 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2019027 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 2228846 8997637 ~ 8999264 (-) True G110570

Expression Profile