RNA id: AMCG00006503


Basic Information

Item Value
RNA id AMCG00006503
length 787
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00006503
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6778367 ~ 6779464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTAACTATGTTTCGGTTCACATTGATGTCACTGCTGCACAAACTGGAGTTTCACGTTTTCTAGAGCTTAACGATAACTGGAGATACGACAAGAGGGAAGATCTTAAACCGGAAGACCCGCTGATGCAGAATTATTCCCACGTGCTGATGGAAGCGGACCCGGCCCACCTGGCTCACTTCGCACAGACTCACCGGACCCTCGCCCTCCTGCCTGGCTTCAGCAAACTCGTCTTCCACTTTTTTGAGTTACCCCCGTTTCGGatcaaactggaaaataaactcGTGCTACTGGAAAAAATCTCGCATAAGACTTGAGCTAgagtgggtggggggtgaggaATGGCATGGTTGATGTTAAGTGTAATATGTAAGTTTACAATTCTGCAAGCCGCTGTATACTTGTTCATAGTGATAtagaacattttatataaagataCAATAAAAGCCAGGGTTTTGTACGATGGTGGAAGCAGAACGCCCTTTGATTGGTTCCccacacagtttttgaaagaATGGTGTTCTGCAAGaagtgtatatagatatattgttTCAAGgagtgttttaattttgaaaagtaaACCTTGCACTGTTTGATAGATagtcttttatatttaaacatatcatGCTACTGAACATTAATAGTAAAATCTAGGGCTGGGATAGACACGACACATCTATGCATCCCTTGGTTTTAGATTCATACAAGAGTTTTTATAATGGGTTTATGTGCTGGTGAGCTCTGCACAGAAAAGTTTCTTACCTGTGGCAAATCTTACACTCTTTG

Function

GO:

id name namespace
GO:0071704 organic substance metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137753 lncRNA downstream 922865 5853814 ~ 5855502 (-) True G110015
TU137733 lncRNA downstream 973915 5803498 ~ 5804452 (-) True G109996
TU137732 lncRNA downstream 975106 5802572 ~ 5803261 (-) True G109995
TU137664 lncRNA downstream 1197640 5577470 ~ 5580727 (-) False AMCG00006476
TU137623 lncRNA downstream 1342603 5434937 ~ 5435764 (-) True G109916
TU137917 lncRNA upstream 40774 6820238 ~ 6820568 (-) True G110152
TU137931 lncRNA upstream 132412 6911876 ~ 6912252 (-) True G110165
TU137934 lncRNA upstream 157949 6937413 ~ 6937803 (-) True G110168
TU137935 lncRNA upstream 164723 6944187 ~ 6944474 (-) True G110169
TU137984 lncRNA upstream 327117 7106581 ~ 7107138 (-) False G110195
AMCG00006502 mRNA downstream 9576 6754781 ~ 6768791 (-) True AMCG00006502
AMCG00006498 mRNA downstream 560859 6191972 ~ 6217508 (-) True AMCG00006498
AMCG00006496 mRNA downstream 681224 6091225 ~ 6097143 (-) True AMCG00006496
AMCG00006493 mRNA downstream 710373 6051327 ~ 6067994 (-) True AMCG00006493
AMCG00006491 mRNA downstream 735443 6016634 ~ 6042924 (-) True AMCG00006491
AMCG00006506 mRNA upstream 76272 6855736 ~ 6860515 (-) True AMCG00006506
AMCG00006507 mRNA upstream 218083 6997547 ~ 7004873 (-) True AMCG00006507
AMCG00006513 mRNA upstream 298856 7078320 ~ 7089125 (-) True AMCG00006513
AMCG00006512 mRNA upstream 319119 7098583 ~ 7106776 (-) True AMCG00006512
AMCG00006514 mRNA upstream 407223 7186687 ~ 7195504 (-) True AMCG00006514
TU137807 other downstream 761424 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 2612767 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 4448376 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 4648112 2097818 ~ 2130255 (-) False G108938
TU136306 other downstream 4754224 2020001 ~ 2024143 (-) True AMCG00006313
TU137903 other upstream 5849 6785313 ~ 6785851 (-) True G110140
TU137983 other upstream 298925 7078389 ~ 7088985 (-) True G110195
TU138386 other upstream 1942924 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 2008354 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 2218173 8997637 ~ 8999264 (-) True G110570

Expression Profile