RNA id: AMCG00006505



Basic Information


Item Value
RNA id AMCG00006505
length 1044
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00006505
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 6786854 ~ 6793168 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCAGTCGTTTACATGTGTGGTGACGTTTCTGTCACTTGCTGTCCTGTTGTGCTGTCAGCGTGTGGATGCCAGAGACGTAAAGGAGCCCTGTGTGACGTGCAGGACCATCACTGACAACTTCGCAAAGggATTCGATCGAACTGCAAAGAAGAACTTTGGAGGAGGAAACACTGCCTGGGAGGAAAGGAAACTGTCTAAATATGAAACGAGTGAGATTCGCCTTGTGGAGATTATTGAAAACCTGTGTGACAGCAGCAGCTTCGAGTGCAACCAAATGGAGAAGTACCCTGACCTGTTCAAGTGGTTCTGCATTGACACCATTGAAGTCTGCTGTCCTAAAGGAACATTTGGCCCGGATTGCAATGCCTGTGTTGGTGGATCCGAGAGGCCCTGCCATGGCAGCGGTGTCTGTAATGGTGATGGCACGAGGAAAGGGACGGGCAGGTGCAGCTGTAATCGAGGATACCAGGGCGAGTTCTGCTTGGACTGTGCGGCTGGCTTCTTCAGCGAAGAGCGCAATGACACGTTCTCTCTCTGTACAGAATGTCATGTCTCTTGTAAGACATGCACAGGAGCGACTAACCAGGAGTGTGAAGAGTGCAAGACTGGCTGGACTAAAGATGATGAAGGAGCATGCAATGaTGTGGATGAATGTTCAAATGAAAACTCTCCATGCAAAGAAGAGCAGTATTGCCTGAATACACCAGGTTTCTTCTCCTGTAACGcgTGTGATAAAGCGTGTGCCGGCTGCGTTGGCAAGGGCCCCGAGAACTGCACGCTCTGTGCCTCTGGCTACGATGAAACTGACGGGAGCTGTACAGATATTGATGAATGCAATCTCGAGGACAAAGTGTGTGTAAGGGAGAACGAGGACTGTGTCAACACCCAAGGCAGCTATAAATGTTATTGCTCCAGTGGATTTGAAGACAAAGAAGGCGTCTGTGAAAAAATTGAAGACGCGGaggAGAACGTAGAAGAAACTTCAGATTCCTTACCAGACTCTCCACCAGCATCACCCCAAGAGCCGCACGAGGACCTATAA

Function


GO: NA

KEGG:

id description
K24335 CRELD; protein disulfide-isomerase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU137834 lncRNA upstream 566768 6218531 ~ 6220086 (+) True G110081
TU137770 lncRNA upstream 802604 5983790 ~ 5984250 (+) True G110024
TU137769 lncRNA upstream 802604 5983956 ~ 5984250 (+) False G110024
TU137710 lncRNA upstream 982295 5799600 ~ 5804559 (+) True G109978
TU137646 lncRNA upstream 1240418 5546207 ~ 5546436 (+) True G109933
TU137910 lncRNA downstream 2581 6795749 ~ 6795994 (+) True G110147
TU137927 lncRNA downstream 62712 6855880 ~ 6857998 (+) True G110161
TU137933 lncRNA downstream 144076 6937244 ~ 6937664 (+) True G110167
TU137991 lncRNA downstream 350099 7143267 ~ 7143659 (+) True G110201
TU138035 lncRNA downstream 446918 7240086 ~ 7240557 (+) True G110240
AMCG00006504 mRNA upstream 3490 6777971 ~ 6783364 (+) True AMCG00006504
AMCG00006501 mRNA upstream 239951 6541397 ~ 6546903 (+) False AMCG00006501
AMCG00006500 mRNA upstream 452011 6287734 ~ 6334843 (+) True AMCG00006500
AMCG00006499 mRNA upstream 519718 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006497 mRNA upstream 552701 6222817 ~ 6234153 (+) True AMCG00006497
AMCG00006510 mRNA downstream 223651 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006511 mRNA downstream 264470 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006508 mRNA downstream 316176 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006509 mRNA downstream 356137 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006515 mRNA downstream 432965 7226133 ~ 7235139 (+) True AMCG00006515
TU137861 other upstream 198455 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 803945 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 803945 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 1658025 5127357 ~ 5128829 (+) False AMCG00006459
TU137475 other upstream 1688156 5080881 ~ 5098698 (+) False G109795
TU137929 other downstream 118708 6911876 ~ 6912254 (+) True G110163
TU138093 other downstream 860504 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 1382592 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1929282 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2773045 9566213 ~ 9567351 (+) False AMCG00006565

Expression Profile