RNA id: AMCG00006508


Basic Information

Item Value
RNA id AMCG00006508
length 2217
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00006508
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7109344 ~ 7116757 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTCGTAAATCTGTTTACTTtgtaattacataatttccATATCACCgcaagtttgttttctttttgaaactTTTTGTTTCAACAATTTAAACTGTGAGTTAATTCATactattattactattattattgcctAATGTTTTTATGTGCTTTCCTTCTTCTACGCATATGGTCAAATATTGTAGGCTAATAACCACCATGGCTGGAAAGGGTTCCTGTCCCCTGATCACCATACAGCCCTCAAGAGGACTCATAGATGAGAAGTTTCAAATCACTGTGAAGAATTTACTGCCAGGACAAGCCGTCACCCTGCACTCTCTGACTCAGTCCGAGGACAGTGACTTCTGGGAGGCATTTGGGCACTATGTCAGTGACGGTAAAGGGACAGTGAAAGtTGCTGAAGATGTGAGTCTAGGAGGCTCATATGATGGCCTTGAGCCCATGGGTCTGCTGTGGAGTATGAAGCCAGTGCCTGGAAGTAGACCAGGACTTAGGTTTCGAAAGAAAGATGTGTGCACCCCAGTGGTTGTGCGCATTGCTGTGTATACAGGGCACATCGGGGATGGATTCACAGAGGCGTCTGCTCTGGCCCGTGCTGTTACTGAGCGCTCGTACATGGCACCAGGCGTCTGCAGGACTGACATCAGGCAGGGTGGAGTCCGAGGAACCCTCTTTGTGCCACCAGGTCCTGGCCCGTTTCCTGCGGTTCTGGACATGTGGGGCGGTGGAGGGGGGCTGGTTGAGTACCGCTCTGCTCTCCTTGCATCACATGGCTACGCGTCTCTGGCTTTGGAGTATCTGTCCCACAGTGAAGGGCAAAATGCCTGGGCTTCCCAGAGCCTAGAAGAACAATATTTTGAGGTGGGGAGGATAAAATGTCCTCTGTTACTGATTGTTGGAGAAGATGATCAGAACTGGCCCACTGCTGAATCTGCAGAAGATATGGAGAAAATGATGGAGGCGGCAGGCAATCGTCATCTGCTGACAACCCTGTCCTACCCCGGTGCTGGTCACCTGATAGAGCCTCCGTACAGCCCACATGCTCGCGCCAGCAACTTCATGTTATTCCCACAGAGGACAAAGGTATCATTGCTCTGGGGAGGGGAGACCAAAGCTCACTCTTACGCACAAGAGGACTCGTGGCAGAAGATCTTGATGTTTCTGGAAGAGCATCTCTATGTTAGTCCCAATGGAGTTCCTCTTTCGAAGCTTTGAGCCTCTTTGACTGGGTATAGTGATTAACGCACAGCTACTTAAGTCTGAAAACTGTAGGGATCAATATAACAAACTGAAATGAGCGAATGGGAAATTTGATAGAATTTTATGAATTTTTGGCGATTCTGAATCGCGATAATGGTAGAGGATTCATGTAAATCATATTTGTACATCCTTAAGTAGCATAAGGCGTATTGCGTAAGTCTGTGTGTGATCATATACAGTACGTACCTTGCTTTGTAAAGTGATTGTAAAATGTTGTCTATCACAGTCTTCTCCCCTTTGCTGATTAGGACTAGGTTGGTCAGAGACTGACAGTTTATTGCTGGTGCAACCTTTAATCTTAATTGTTAGTGCCTAAAGGACCTTTCACACTGAGCGTATCCTACCAAAACATCAGTGtcaggctttttattttttttacgtCAAGTTGCTTTCACACCGAATGTAACAAAACCTGAAAGAACTGtctataatatatgtttttaattcttataaatacaatttataatctatattttaagtatttgaacGCCAGTGTTATGACTTTTAGGTGTAGTAAAGACAGCTACTGAAAAGCATGTGTTtacactgaacattttcattttaagtggATAATCATCATATAAAAGCAATGTTTACCAATAGAGGATTTACAGTGAATGTGATTAGATTTCACACAACACGTACAAAAAACAGGACCTGGTCAGTTTTTGACATGGTCAGTTTTATGCCACGTAGCCAATGTGAAAGCTTGCATAGGAAGTATTGTATTCTAAGGAAATAATATATGCCTCTATTTATTTACGTCAGCTGAATGTGCATTTTTGTTGACTACTGGGTAAAGGCATCTGTGAAAGTTTTTATTGAAGACACTAATCATATTGTATGTAGAAATATTCTAGAGAAGCTGCTTCCATGGTATGGTTGTGTAGGTCATTCTTCCTACAGTAAGGAAGGATCTACTGTCCTCTGTATGAAATAAACCAGTTTCTAAGCTTTAA

Function

GO:

id name namespace
GO:0006637 acyl-CoA metabolic process biological_process
GO:0016790 thiolester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137933 lncRNA upstream 171680 6937244 ~ 6937664 (+) True G110167
TU137927 lncRNA upstream 251346 6855880 ~ 6857998 (+) True G110161
TU137910 lncRNA upstream 313350 6795749 ~ 6795994 (+) True G110147
TU137834 lncRNA upstream 889258 6218531 ~ 6220086 (+) True G110081
TU137769 lncRNA upstream 1125094 5983956 ~ 5984250 (+) False G110024
TU137991 lncRNA downstream 26510 7143267 ~ 7143659 (+) True G110201
TU138035 lncRNA downstream 123329 7240086 ~ 7240557 (+) True G110240
TU138043 lncRNA downstream 210273 7327030 ~ 7333170 (+) True G110245
TU138041 lncRNA downstream 476530 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 577797 7694554 ~ 7695513 (+) True G110286
AMCG00006511 mRNA upstream 50829 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006510 mRNA upstream 79884 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006505 mRNA upstream 316176 6786854 ~ 6793168 (+) True AMCG00006505
AMCG00006504 mRNA upstream 325980 6777971 ~ 6783364 (+) True AMCG00006504
AMCG00006501 mRNA upstream 562441 6541397 ~ 6546903 (+) False AMCG00006501
AMCG00006509 mRNA downstream 32548 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006515 mRNA downstream 109376 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006516 mRNA downstream 173247 7290004 ~ 7290669 (+) True AMCG00006516
AMCG00006517 mRNA downstream 367387 7484144 ~ 7490138 (+) True AMCG00006517
AMCG00006518 mRNA downstream 425056 7541813 ~ 7577273 (+) True AMCG00006518
TU137929 other upstream 197090 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 520945 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1126435 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1126435 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 1980515 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 536915 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 1059003 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1605693 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2449456 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5894427 13011184 ~ 13043448 (+) True G111197

Expression Profile