RNA id: AMCG00006509


Basic Information

Item Value
RNA id AMCG00006509
length 2568
RNA type mRNA
GC content 0.51
exon number 19
gene id AMCG00006509
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7149305 ~ 7183103 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAGTTGGAGGAGTGGATGCTGCTGCAAAATCCAGGAGTCATGGCAGGGCTTGCGTTGTTTCAGGTGATGGTCCCAGCCCTGGTTCTCTCCAGCTGCGTCTTGTGCTTCACCCAGCCCATGCCAAGAATCTATTTGACGTTTGAAGATGTGCCCAGAAGAGCAGTTGCAGTGAATCAAAGCCTAAAAAGAGCCGGGACGTTTGCGGCAAGTGCAGGGTCCTTTGCCAGGCTTTACGTGCCCGGACAGCCTGCAGCTGAGACGCCTGGCACCGCGTCGATGAACTTGATCCGGCTGCGGCTGAGACTGGAGCGAACAGCAGTGTTGCTCATGAATACTGCCCAGTTTCCAGTGGCTAGCGACTCGAGGGCCGCACGTCCCCAGATCTCTCCTGAGCAGAATAGTGCGCCGCTGTTCTTGCAGGTCAAAGAATCGGGCCCTGAAAGAAGCTGCCTTTTTCAGAGTACCCTCGAGTGGCTCTCGCCCAGATCAGGCCTCGCTATGAATGCCAAGTTAGGCTTTTCACTGGAGAACAGCTTCATCGaactgcaggacacacagtcATTCGAGCACTACAGCCTGTCCGAGTTCCCCATGGACTACCGCATCCTCCTGATGGACGAGGACCAAGATCGCATGTATCTGGGCTGCAAAGATCACGTGTTGTCCATGAGCATCAATAACATTACCCGGGGGCCTTTAAAGGTGTTTTGGCCAGCCTCCAGCAGCAAAATTGATGAGTGCAGAATGGCTGGCAAAGATCCGATGCATGGCTGTGGCAATTTTGTGCGTGTGATCCAGCCGTACAATCGCACACACTTATTTATATGTGGCAGCGGAGCCTTCAGTCCGGTGTGTGCCTATATCAACAGAGGTCGAAGGTCAGAAGAACAAGTGTTTTATATCGACTCCAAGGCTGAATCTGGAAAGGGAAGGTGCTCCTTTAATCCCAGTGTTAACACAGTGTCAGTTATGATCAATGAAGAGCTGTTTTCAGGCATGTACATTGACTTCATGGGGACGGACGCTGCCATTTTTAGAAGCGTGACGAGGAGAAACGCAATCAGAACGGACCAACACAACTCAAAGTGGCTGAGTGAACCCATCTTCATTGATGCCCAGCTGATTCCCGATGGCTCAGACCCCAATGATGCCAAACTATACTTTTTCTTCAGAGAGAGGATGACAGACAACAGTGGCAACACCAAGCACATCCACACCATGGTGGCTAGGATATGCCCAAATGACATTGGTGGTCAGAGGAGTCTGGTGAATAAGTGGACAACGTTCCTCAAAGCAAGACTCGTGTGCTCAGTGGTAGAGGGGGACGGCACGGAGACACACTTTGATGAGCTAGAGGATATATTTTTGCTGGAAACAGAACAGCCCAAGAACCTTTTAGTGTTTGGGATTTTCACATCCTCAAGTTCAGTGTTCAAGGGCTCAGCAGTGTGTGTTTACAATATGGCAGATATCCTAACTGTGTTTAATGGCCCATTTGCCCACAAGGAAGGCCCAAACCACCAGTGGGTTGCATACCAAGGCAGAATTCCTTACCCCAGACCTGGTACATGCCCCGGAGGAGCCTTCACTCCGAACCTATTGACGACCAAGGATTTCCCAGACGATGTAGTTACTTTCATTAGGAACCACCCTGTCATGTACAATCCCATCTACCCAATAAATAAGAGACCGCTCGTTGTGAGAGCTCACGCTGACTATAAATACACAGCAATAGCAGTTGATCAAGTCATTGCCGCAGATGGAAAATACCATGTCTTGTTTCTGGGCACAGATAAAGGGACTGTGCAGAAAATGATTGTGCTTCCCACTAACAGATCGCAAGATACGGAGCTTATCTTAGAGGAGCTGGAAGTGTTTAAGaATCATGTTCCTGTGACCACAATGAAAATTTCATCcaaaaagATCTCCCTGCACCGCTGCCAGGCCTACGGCTCGGCCTGTGCTGACTGCTGCTTGGCCAGAGACCCCTACTGCGCCTGGGACGGCATGACCTGCTCCAGGTTCTATCCCACCGGGAAGAGAAATGCGGCCGAGATGGTGCAATATGCGGTGAAGAACAACACCACGTTTCTGGAGTGTTTGCCGAAGTCTCCGCAAGCATCTGTGAAATGGCTAATTCAGAGGGAAAACGACAGGAGGAAAGAGGTCAAGTTAAACGACAGAGTCTTATTGACAGAGCACGGGCTGCTGCTGAGATACGTACGGGACTCCGACCAAGGCCTGTACTACTGCCTAGCCACCGAGAACAGCTTCAAACAAACTGTGGCCAAAATAAAGCTGAAGGTGATCAGCACTGAGCTGGTGTCCTCCGTGACGGACAAAAAGCACCCCTGGTCTTGGGCCAGTTCTCTGAGTGGCTATCAACTCCATTCCAAGGACTTTATCGGGATGTTTAGCCACGCTGAAATGCAAACCATTAACCAGTACTGCAAGGAGAACAGGCAGCGGGAGAGAATGGAAACGCTGAGGGGGGACCTGGCCAAACTGAAGCCCCTCATGGACCGAAGGAAGAGCAGAAACCGGAGGAATCACCTCCCCGAGTCGTAG

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06840 SEMA3; semaphorin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137991 lncRNA upstream 5646 7143267 ~ 7143659 (+) True G110201
TU137933 lncRNA upstream 211641 6937244 ~ 6937664 (+) True G110167
TU137927 lncRNA upstream 291307 6855880 ~ 6857998 (+) True G110161
TU137910 lncRNA upstream 353311 6795749 ~ 6795994 (+) True G110147
TU137834 lncRNA upstream 929219 6218531 ~ 6220086 (+) True G110081
TU138035 lncRNA downstream 56983 7240086 ~ 7240557 (+) True G110240
TU138043 lncRNA downstream 143927 7327030 ~ 7333170 (+) True G110245
TU138041 lncRNA downstream 410184 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 511451 7694554 ~ 7695513 (+) True G110286
TU138195 lncRNA downstream 730747 7913850 ~ 7914828 (+) True G110361
AMCG00006508 mRNA upstream 32548 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006511 mRNA upstream 90790 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006510 mRNA upstream 119845 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006505 mRNA upstream 356137 6786854 ~ 6793168 (+) True AMCG00006505
AMCG00006504 mRNA upstream 365941 6777971 ~ 6783364 (+) True AMCG00006504
AMCG00006515 mRNA downstream 43030 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006516 mRNA downstream 106901 7290004 ~ 7290669 (+) True AMCG00006516
AMCG00006517 mRNA downstream 301041 7484144 ~ 7490138 (+) True AMCG00006517
AMCG00006518 mRNA downstream 358710 7541813 ~ 7577273 (+) True AMCG00006518
AMCG00006519 mRNA downstream 468687 7651790 ~ 7652194 (+) True AMCG00006519
TU137929 other upstream 237051 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 560906 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1166396 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1166396 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 2020476 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 470569 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 992657 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1539347 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2383110 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5828081 13011184 ~ 13043448 (+) True G111197

Expression Profile