RNA id: AMCG00006510


Basic Information

Item Value
RNA id AMCG00006510
length 1678
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00006510
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7016819 ~ 7029460 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gaaGACTTAGAGTCTATGTAGCCGATCTGTATTTCTAGTATCAAAAAAAGTGGGAGATAAATATGATATAACTGCTTTGAGTTGTCTATAttctatttatatgtttttctatttttactcAATGGTCATATATTGCAGGTCAACAATGGCAATGGCTGGAAAGGGTTCCTGTCCCCTGATCACCATACAGCCCTCAAGAGGACTCATAGATGAGAAGTTTCAAATCACTGTGAAGAATTTACTGCCAGGACAAGCCGTCACCCTGCACTCTCTGACTCAGTCCGAGGACAGTGACTTCTGGGAGGCATTTGGGCACTATGTCAGTGACGGTAAAGGGACAGTGAAAGTCGCTGAAGATGTGAGTCTAGGAGGCTCGTATGATGGCCTTGAGCCCATGGGTCTGCTGTGGAGTATGAAGCCAGCGCCTGGAAGTAGACCAGGACTTAGGTTCCGAAAGAAAGATGTGAATACCCCACTGGTTATGCGCATTTATGTGTATAAAGGGCATATGAGGGATGGATTCAACGCAGAGTCTGCTCTGGCCTGTGCCGTCACAGAGCGCTCGTACATGGCACCAGGTGTCCGCAGGACTGAGATCAGCCAGGATGGCGTCTTAGGAACCCTCTTTGTGCCACCAGGTCCTGGCCCTTTTCCTGCGGTTCTGGACATGTGGGGCGGCGGAGGAGGTCTGGTTGAGTACCGCTCTGCTCTCCTCGCGTCTCATGGCTTTGTCTCTCTGGCTTTGGAGTATTTTTCTTCCAGAACCATGGGAAATGCCTCTGAGAAGAATCCTTTAACTGGAAATGAATATTTCGAGGCAGCCTTCATCATCCTGAAGGAGCATCCACAGGTGGCCAGTGAATGGGTGGCCTTGCTTGGTTTATCCTTCGGGACATCTGTTGCTCTGGGAATGGCTGTATACTCAAGTGTCATACAGCCCAGCTGTGTGGTGTGCATCAGTGGCAGCCATGTTCAACCTGTAAAGGAATCAATTTCCGGTGTCTTTGCAGAGTTTGGCAAGAACGTTCATAAGACTCGCTATGATGAGAACAATTACGTGATCTGGAGGGATCTCCTTTTGCCAATCCCTACAGATCCAAACAAGAAAGTGGATCTGGGGAGGATAAAATGTCCTCTGTTATTGATTGTTGGAGAAGATGATCAGAACTGGCCAGCTGCAGAATCTGCAGAAGATCCCTCAAGAGGACTCATAGATGAGAAGTTTCAAATCACTGTGAAGAATTTACTGCCAGGACAAGCCGTCACCCTGCACTCTCTGACTCAGTCCGAGGACAGTGACTTCTGGGAGGCATTTGGGCACTATGTCAGTGACGGTAAAGGGACAGTGAAAGGGCACATCGGGGATGGATTCACAGAGGCGTCTGCTCTGGCCCGTGCTGTTACTGAGCGCTCGTACATGGCACCAGGCGTCCGCAGGACTGACATCAGGCAGAGTGGAGTCCGAGGAACCCTCTTTGTGCCACCAgGTCCTGGCCCGTTTCCTGCTGTTCTGGACCTGTGGGGCAGTGGAGGACTGGTTGAGTACCGTTCTGCTCTCCTCGCATCTCATGGCTACGTGTCTCTGGCTTTGGACTATTATTCTACGCAAGTCATAGCAAAATCTCCTGATAAAAATCCTTCTCTTGGATATGAGTATTTTGAGGTAAATCAAAATTGA

Function

GO: NA

KEGG:

id description
ko02010 ABC transporters
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137933 lncRNA upstream 79155 6937244 ~ 6937664 (+) True G110167
TU137927 lncRNA upstream 158821 6855880 ~ 6857998 (+) True G110161
TU137910 lncRNA upstream 220825 6795749 ~ 6795994 (+) True G110147
TU137834 lncRNA upstream 796733 6218531 ~ 6220086 (+) True G110081
TU137770 lncRNA upstream 1032569 5983790 ~ 5984250 (+) True G110024
TU137991 lncRNA downstream 113807 7143267 ~ 7143659 (+) True G110201
TU138035 lncRNA downstream 210626 7240086 ~ 7240557 (+) True G110240
TU138043 lncRNA downstream 297570 7327030 ~ 7333170 (+) True G110245
TU138041 lncRNA downstream 563827 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 665094 7694554 ~ 7695513 (+) True G110286
AMCG00006505 mRNA upstream 223651 6786854 ~ 6793168 (+) True AMCG00006505
AMCG00006504 mRNA upstream 233455 6777971 ~ 6783364 (+) True AMCG00006504
AMCG00006501 mRNA upstream 469916 6541397 ~ 6546903 (+) False AMCG00006501
AMCG00006500 mRNA upstream 681976 6287734 ~ 6334843 (+) True AMCG00006500
AMCG00006499 mRNA upstream 749683 6254988 ~ 6267136 (+) True AMCG00006499
AMCG00006511 mRNA downstream 28178 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006508 mRNA downstream 79884 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006509 mRNA downstream 119845 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006515 mRNA downstream 196673 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006516 mRNA downstream 260544 7290004 ~ 7290669 (+) True AMCG00006516
TU137929 other upstream 104565 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 428420 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1033910 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1033910 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 1887990 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 624212 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 1146300 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1692990 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2536753 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5981724 13011184 ~ 13043448 (+) True G111197

Expression Profile