RNA id: AMCG00006513


Basic Information

Item Value
RNA id AMCG00006513
length 1947
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00006513
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7078320 ~ 7089125 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttaatattacttatttagtaatataattgaatgatattagtttgctatttttgtcacaaataaatgattattgcacatctgtgacttgaccgcatcttctcTCTgactttattaaatcaaatacacatGCAGCCTAGACCCAGAATCTATGTAGCCAATCTGAATAGTATCACAACATGTAGATAGTAGATCCGATCTGGTTATTGTGTATTTAGTAGAGTTTGTTCTTCAGATTATATCTACACTATGCACACTACAcctcatgttttgcttttctataTGTACTAACTCAGTGGTCATATTGCAGGTCAATAACAGCAATGGCTGGAAAGGGTTCCTGTCCCCTGATCACCATACAGCCCTCAAGAGGACTCATAGATGAGAAGTTTCAAATCACTGTGAAGAATTTACTGCCAGGACAAGCCGTCACCCTGCACTCTCTGACTCAGTCCGAGGACAGTGACTTCTGGGAGGCATTTGGGCACTATGTCAGTGACGGTAAAGGGACAGTGAAAGTCGCTGAAGATGTGAGTCTAGGAGGCTCGTATGATGGCCTTGAGCCCATGGGTCTGCTGTGGAGTATGAAGCCAGCGCCTGGAAGTAGACCAGGACTTAGGTTCAGAAAGAAAGATGTGTGCACCCCAGTGGTTGTGCGCATTGCTGTGTATACAGGGCACATCGGGGATGGATTCACAGAGGCGTCTGCTCTGGCCCGTGCTGTTACTGAGCGCTCGTACATGGCACCAGGCGTCCGCAGGACTGACATCAGGCAGAGTGGACTACGAGGAACCCTCTTTGTGCCACCAgGTCCTGGCCCGTTTCCTGCGGTTCTGGACTTGTGGGGCGCCGGAGGGCTGGTTGAGTACCGCTCTGCTCTCCTCGCATCTCATGGCTACGTGTCTCTGGCTCTGGACTATTATTCTACGCAAGTCATGGAAAAATCTCCTGACAACAACCCCTCTCTTGAATATGAGTACTTTGAgGCAGCCTTCACCATCCTTCAGGACCATCCACAGGTAGCCAGTGATCGAGTGGCTTTGCTTGCTTCATCCTATGGAACATCAGTTGCTCTACGGATGGCTGTATATTCAGCTGTAATGCATCCCAGATGTGTGGTGTGCATCAGTGGCAGCCATGTTCAACCTGTAAAGAAATCAATTTCCAATATCTATGTAGAGATGAAGACAAATCTCCATAAGGTGGGGAGGATAAAATGTCCTCTGTTACTGATTTTTGGAGAAGATGATCATGGCTGGCCCACTGTTGAATCTGCAGAAGACATGGAGAAAATGATGGAGGCGGCAGGGAATCGTCATCTGTTGACAACCCTGTCCTACCCTGGAGCCGGTCACCTGATAGAGCCTCCGTACAGCCCACATGCTTACGCCAGCAAAATTATTGTAGTGCAAATTGAGTTGAAAGGCATGTTCaccccattttatttttattttaaaggtgTCACCATGCTTTGGGGCGGGGAGACCAAACTGCATTCTCACGCACAGGAAGACTCGTGGCAGAAGATCTTGGCATTTCTGGATCAGCATCTTTATCGCAGTCCCGGCACAAGCTCTCATTTGTTCAGAAAGACAGATGTGTGCACCCCAGTGGTTGTGCGCATTGCTGTGTATACAGGGCACATCGGGGATGGATTCACAGAGGCGTCTGCTCTGGCCCGTGCTGTTACTGAGCGCTCGTACATGGCACCAGGCGTCCGCAGGACTGACATCAGGCAGAGTGGACTACGAGGAACCCTCTTTGTGCCACCAgGTCTTGGCCCGTTTCCTGCTGTTCTGGACTTGTGGGGCGCCGGAGGGCTGGTTGAGTACCGCCCTGCTCTCCTCGCATCTCATGGCTACGTGTCTCTGGCTATGGACTATTATTCTACGCAAGTCATCGAAAAATCTCCTGACAACGACCCCTCTCTTGAATATGAGTACTTTGAg

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137935 lncRNA downstream 133846 6944187 ~ 6944474 (-) True G110169
TU137934 lncRNA downstream 140517 6937413 ~ 6937803 (-) True G110168
TU137931 lncRNA downstream 166068 6911876 ~ 6912252 (-) True G110165
TU137917 lncRNA downstream 257752 6820238 ~ 6820568 (-) True G110152
TU137753 lncRNA downstream 1222818 5853814 ~ 5855502 (-) True G110015
TU137984 lncRNA upstream 17456 7106581 ~ 7107138 (-) False G110195
TU137992 lncRNA upstream 54129 7143254 ~ 7143678 (-) True G110202
TU137997 lncRNA upstream 56432 7145557 ~ 7185532 (-) True G110204
TU138057 lncRNA upstream 395017 7484142 ~ 7484368 (-) True G110259
TU138059 lncRNA upstream 400133 7489258 ~ 7489469 (-) True G110261
AMCG00006507 mRNA downstream 73447 6997547 ~ 7004873 (-) True AMCG00006507
AMCG00006506 mRNA downstream 217805 6855736 ~ 6860515 (-) True AMCG00006506
AMCG00006503 mRNA downstream 298856 6778367 ~ 6779464 (-) True AMCG00006503
AMCG00006502 mRNA downstream 309529 6754781 ~ 6768791 (-) True AMCG00006502
AMCG00006498 mRNA downstream 860812 6191972 ~ 6217508 (-) True AMCG00006498
AMCG00006512 mRNA upstream 9458 7098583 ~ 7106776 (-) True AMCG00006512
AMCG00006514 mRNA upstream 97562 7186687 ~ 7195504 (-) True AMCG00006514
AMCG00006520 mRNA upstream 504162 7593287 ~ 7621049 (-) True AMCG00006520
AMCG00006522 mRNA upstream 566727 7655852 ~ 7666518 (-) True AMCG00006522
AMCG00006524 mRNA upstream 578495 7667620 ~ 7688311 (-) True AMCG00006524
TU137903 other downstream 292469 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 1061377 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 2912720 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 4748329 2324131 ~ 2329991 (-) True AMCG00006328
TU136304 other downstream 4948065 2097818 ~ 2130255 (-) False G108938
TU138386 other upstream 1633263 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 1698693 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 1908512 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 2456370 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 2998153 10087278 ~ 10107285 (-) True AMCG00006579

Expression Profile