RNA id: AMCG00006515


Basic Information

Item Value
RNA id AMCG00006515
length 2367
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00006515
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7226133 ~ 7235139 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggTGCTGGGGAGTCGGGGAAAAGCACGATTGTGAAACAGATGAAAATCATCCACGAAGCTGGCTATTCAGAAGAGGAATGTAAACAATACAAAGCTGTTGTTTACAGCAACACCATTCAGTCTATAATTGCGATCATCAGAGCCATGGGGAGATTGAAGATAGACTTCGGTGACTCAGCCAGAGCGGATGATGCACGTCAGCTGTTCGTACTGGCAGGGTCTGCAGAAGAGGGCTTCATGACCTCGGAGCTCGCTGGGGTCATCAAGAGATTGTGGAAAGATGGCGGCGTCCAGGCCTGCTTCAACCGCTCCAGAGAATACCAGCTGAACGACTCTGCTGCATACTACCTGAATGACTTGGACAGGATAGCACAGAACACCTACATCCCCACCCAGCAGGACGTCCTCCGCACCCGAGTTAAGACGACTGGAATCGTGGAGACGCATTTCACATTCAAGGACCTGCATTTCAAGATGTTTGACGTGGGCGGTCAGAGATCGGAGAGAAAGAAGTGGATCCACTGCTTCGAGGGAGTCACGGCCATCATCTTCTGTGTGGCCCTCAGTGATTATGACCTTGTCTTGGCTGAAGATGAGGAAATGaaccGGATGCACGAAAGCATGAAACTGTTCGACAGTATCTGCAATAACAAGTGGTTCACTGACACCTCCATCATCCTCTTCCTCAACAAGAAGGATCTGTTCGAGGAGAAGATTAAAAAGAGCCCTCTGACCATCTGCTACCCTGAGTATGCAGGATCCAACACGTACGAGGAAGCGGCCGCCTACATCCAGTGTCAGTTTGAGGACCTGAACAAACGGAAAGACACCAAGGAGATCTACACCCACTTCACCTGTGCCACGGACACCAAGAATGTACAGTTCGTCTTCGATGCCGTCACGGATGTCATCATCAAGAACAACCTGAAGGACTGCGGCCTATTTTAAAGCTCCCGGACCTTGatTGGAAGATAATGACCCGGCTCAACACACGCATTTGTGGCGGAGAATAGGCCCAAAATGTGGAAAATTTCAATGATGGACCAGTACTGTACTATTTGCCAGTTTTAAgagctttatttatgtttttgtcttggaatattttaaaatagaatttaGGAAACATTTGTCTAGATTGTATGTATAATTGTAACTGTTGCAGcaactgtttttcacaaaaagGTCATTTTTTTTGAAGgatatttgaatttttttttttttttttgcttttttgcctCTTGTCAAAGAAGGCTTTccttttgtggaaaaaaagttTCCCCCAGTCGTCGAAAAAGGGTTCGAGTGGTATCCAGTTTTTAGGCTTCTGTGCCTTCGCATGCCTTTTACTGTCCCtgttaaatgcttttgtttgcCTGCTCAGCTGTTCCCACACAAGTGTAAAGTTTCATGTTTAATATGACTTTGTTTTCACATTCCTTCCCAGCATTTCCCCCGATCTCCCTATGGCTCAGTTTGACTGAATTGATTATGTTTTGAGATTTCGTGTTGACTCACTTTTAAAACTCCAGTATATTCAGCGAGGCCTCAAAACGTCTCCGTGCACAGGTTTGTGATCCTGTTTTAGAGGCTTTTAAAACTACAGAAACGGTAAAGACATTGACAATGTGGGCGATTTTTAACTGGTTGGCAAGTGACTcaaatttgaatataaaattgtatttttattttaaagaatctAGTGGTCATTTCTTCTTGGTTGACGATGGAGCCTGCGTCCATCTTGTGTATACCTAAACCATGCCCTCGTGGAAGgcatcatttaaataaaggtatttgtgaccttgttttaaaaagaaaaacagccacAAATGTCATCCATTCTGATGAGAAACACATTCCATGTTTTGTACAGGAGAAGAGTAAGAGACCCATCTGTCTGGTGAAACTGTGGTATCCTACCACACGTCAGTTAGCACAGTGCTGTGGCGTATTGGATTTTAAAGACAATGTTTTGTCGATGAGATGTAATGTACTGTTAATGTGCATGATTTTAATTAGCTTTATGATCTACtctaatttcatttttactcCAGAAATGGTTGTACGATCCGATAAAACgcaatgtttatttacaaaatcaCAGATTCTATATGTGCCTTTGCTtgtggaatattttaattttcttttttgaacTTACAAATGATCATAAAGGAATGTTTCACAGCCTTGTTGGTCGGTTTTTTGGGATGGAGTGGCGGTGtcggcggccagccctgtgtgacggattttaaaatgtgtatagaTTGAACTACACCGAGGAAAACTCCCCCAATCAGCAGGGGGTTCTCGATTTAACCTGTACTTCTAGATAACCCTGAGCAAGTTAATAAAAATCCTGAAATCCTG

Function

GO:

id name namespace
GO:0007193 adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031821 G protein-coupled serotonin receptor binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0031683 G-protein beta/gamma-subunit complex binding molecular_function

KEGG:

id description
K04630 GNAI; guanine nucleotide-binding protein G(i) subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU137991 lncRNA upstream 82474 7143267 ~ 7143659 (+) True G110201
TU137933 lncRNA upstream 288469 6937244 ~ 6937664 (+) True G110167
TU137927 lncRNA upstream 368135 6855880 ~ 6857998 (+) True G110161
TU137910 lncRNA upstream 430139 6795749 ~ 6795994 (+) True G110147
TU137834 lncRNA upstream 1006047 6218531 ~ 6220086 (+) True G110081
TU138035 lncRNA downstream 4947 7240086 ~ 7240557 (+) True G110240
TU138043 lncRNA downstream 91891 7327030 ~ 7333170 (+) True G110245
TU138041 lncRNA downstream 358148 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 459415 7694554 ~ 7695513 (+) True G110286
TU138195 lncRNA downstream 678711 7913850 ~ 7914828 (+) True G110361
AMCG00006509 mRNA upstream 43030 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006508 mRNA upstream 109376 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006511 mRNA upstream 167618 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006510 mRNA upstream 196673 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006505 mRNA upstream 432965 6786854 ~ 6793168 (+) True AMCG00006505
AMCG00006516 mRNA downstream 54865 7290004 ~ 7290669 (+) True AMCG00006516
AMCG00006517 mRNA downstream 249005 7484144 ~ 7490138 (+) True AMCG00006517
AMCG00006518 mRNA downstream 306674 7541813 ~ 7577273 (+) True AMCG00006518
AMCG00006519 mRNA downstream 416651 7651790 ~ 7652194 (+) True AMCG00006519
AMCG00006521 mRNA downstream 525675 7760814 ~ 7782870 (+) True AMCG00006521
TU137929 other upstream 313879 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 637734 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1243224 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1243224 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 2097304 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 418533 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 940621 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1487311 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2331074 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5776045 13011184 ~ 13043448 (+) True G111197

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048675 True 3744 mRNA 0.38 9 NC_007136.7 20997671 ~ 21031007 (-)
grasscarp (Ctenopharyngodon idella) CI01000019_03458890_03473706.mRNA True 1267 mRNA 0.49 8 CI01000019 3458745 ~ 3473706 (-)