RNA id: AMCG00006516


Basic Information

Item Value
RNA id AMCG00006516
length 666
RNA type mRNA
GC content 0.61
exon number 1
gene id AMCG00006516
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7290004 ~ 7290669 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGAGCTCTGCCTCTCTCCTGCCGACGTCACATCCGGGTCACTCGCCTGCGACTCTGTGTAGCAGCTCCAGCGCTACAGTGTAGCGCAGCCCCACACCGCCGCTGTGCAGGCGAGCTGGCATGGCTCTCACCGCGGGCATCCAGCGACACTGAAACAACCCTGTGCTCTCCACCGGGGCGGCCGACACCAATAACACCGAGAGTCCCGCGAACTCCTGCCAGACTGACGTCCACCATGTCCAAGagcctgaaaaagaaaagccactGGACCAACAAAGTCCACGAGATTGTCATTTGCAGGAATAAGGACGGGGAGCTGGGCTTCGACCTGAGAGGAGGCGCCGAGAACGGCCAGTTCCCCTACCTGGGCGAGGTGAAGCCGGGCAAAGTGGTCTGCCAGAGTGGGAAACTGTCCCAGGatgagctgctgctggaggtcAACGACACCCCCGTGGCTGGGCTCACCATCAGGGATGTGCTGGCCGTTGTCAAGCACTGCAAAGACCCCATCCGACTGAAATGTGTCAGGCAAGGTGAGTGCCGCTTTGGGTGTCTGTGCTCACCCCCCCAAGCGATGCCGGGGCCGAGACCGAGAGCAAGCAAAGTTTCAAACCCGACGAGACGAGACGAGACGAGACGAGCGGGCCGTTATGCGCAGCCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138035 lncRNA upstream 49447 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 146345 7143267 ~ 7143659 (+) True G110201
TU137933 lncRNA upstream 352340 6937244 ~ 6937664 (+) True G110167
TU137927 lncRNA upstream 432006 6855880 ~ 6857998 (+) True G110161
TU137910 lncRNA upstream 494010 6795749 ~ 6795994 (+) True G110147
TU138043 lncRNA downstream 36361 7327030 ~ 7333170 (+) True G110245
TU138041 lncRNA downstream 302618 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 403885 7694554 ~ 7695513 (+) True G110286
TU138195 lncRNA downstream 623181 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 797368 8088037 ~ 8090127 (+) True G110429
AMCG00006515 mRNA upstream 54865 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006509 mRNA upstream 106901 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006508 mRNA upstream 173247 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006511 mRNA upstream 231489 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006510 mRNA upstream 260544 7016819 ~ 7029460 (+) True AMCG00006510
AMCG00006517 mRNA downstream 193475 7484144 ~ 7490138 (+) True AMCG00006517
AMCG00006518 mRNA downstream 251144 7541813 ~ 7577273 (+) True AMCG00006518
AMCG00006519 mRNA downstream 361121 7651790 ~ 7652194 (+) True AMCG00006519
AMCG00006521 mRNA downstream 470145 7760814 ~ 7782870 (+) True AMCG00006521
AMCG00006525 mRNA downstream 516885 7807554 ~ 7812395 (+) True AMCG00006525
TU137929 other upstream 377750 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 701605 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1307095 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1307095 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 2161175 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 363003 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 885091 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1431781 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2275544 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5720515 13011184 ~ 13043448 (+) True G111197

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048674 False 9099 mRNA 0.44 23 NC_007136.7 20745728 ~ 20985155 (-)