RNA id: AMCG00006517



Basic Information


Item Value
RNA id AMCG00006517
length 507
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00006517
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7484144 ~ 7490138 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AACTATTACGGCACTCCCAAGCCGCCAGCTGAACCAACCCCCTTGCTGCTAAATGTAACAGACCAGATCCTGCCGGGTGCCAGACCCAGTGCCGAGGGGAAGAGGAAACGAAACAAATCCGTGAGCAACATGGAGAAAGCTGGCATAGACCCCCccgaggaagaagaggaggagaggcCCGTCGTAAATGGCAACGGCGTAGCAATAACTCCAGAGTCCAGCGAACACGAGGACAAAAGCACCGACGCTTCGGGCGAGATGCCCCCTCAGCCATACACGGCGCCCACCTACAGTCCAGCCGAGGGGGCGCCGGAGGAAGAGGAGCCGCCGAAGCCACCCATCAAGCCCGACGAGAACGATGAGTTGGGGCCGCTGCCGGACAACTGGGAGATGGCCTACACGGAGAAGGGAGAAGTCTATTTCATTGATCACAACACCAAGACGACATCATGGCTTGATCCCCGGCTTGCAAAGAAGGCGAAGCCCCCCGAAGAATGCAAAGAGGAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138043 lncRNA upstream 150974 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 243587 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 340485 7143267 ~ 7143659 (+) True G110201
TU137933 lncRNA upstream 546480 6937244 ~ 6937664 (+) True G110167
TU137927 lncRNA upstream 626146 6855880 ~ 6857998 (+) True G110161
TU138041 lncRNA downstream 103149 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 204416 7694554 ~ 7695513 (+) True G110286
TU138195 lncRNA downstream 423712 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 597899 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 642957 8133095 ~ 8135492 (+) True G110439
AMCG00006516 mRNA upstream 193475 7290004 ~ 7290669 (+) True AMCG00006516
AMCG00006515 mRNA upstream 249005 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006509 mRNA upstream 301041 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006508 mRNA upstream 367387 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006511 mRNA upstream 425629 7057638 ~ 7058515 (+) True AMCG00006511
AMCG00006518 mRNA downstream 51675 7541813 ~ 7577273 (+) True AMCG00006518
AMCG00006519 mRNA downstream 161652 7651790 ~ 7652194 (+) True AMCG00006519
AMCG00006521 mRNA downstream 270676 7760814 ~ 7782870 (+) True AMCG00006521
AMCG00006525 mRNA downstream 317416 7807554 ~ 7812395 (+) True AMCG00006525
AMCG00006530 mRNA downstream 328534 7818672 ~ 7830030 (+) True AMCG00006530
TU137929 other upstream 571890 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 895745 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1501235 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1501235 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 2355315 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 163534 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 685622 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1232312 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 2076075 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5521046 13011184 ~ 13043448 (+) True G111197

Expression Profile