RNA id: AMCG00006518


Basic Information

Item Value
RNA id AMCG00006518
length 2421
RNA type mRNA
GC content 0.63
exon number 10
gene id AMCG00006518
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7541813 ~ 7577273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTTTGCAGGTGTTGGAGCAGTGGGATGTCCCAGGCAGCCCCCAGACGAGCTTATCTGCTCCCGTTATTCCACAGAATGTTCCCTTCCCAACAAACTTCCACAGGGCTTCTTTCCCAGACTCAGCCGATGGCTTTGATCAAAGAAAACCTGACCCCTATGAACTCTATGAGAAGTCCAGAGCTATCTATGAGAGTAGGCGACCGGATTACAGGGAGCTGGACGTTCACCTCCGAAGACAGAAGTCCGGATTCGGCTTCAGGATACTGGGAGGAGATGAGCCAGGACAGCCAATCTTAATTGGAGCAATAATCGAGAGGAGCTCGGCGGACAGGGACGGGAGGCTGCGGCCGGGCGACGAGCTCGTGTTGGTGGATGGGATCCCAGTGGCCGGGAAGACTCACAGATACGTCATTGACCTCATGCATGGTGCTGCGCGCAACGGACAGGTCAACCTCactgtgaaaagaaaagtgcaGGGGATGGGCGAGCCCTGCCCCGAGAATGGCCGAAGCCCTGGCTCGGTCTCCACTCAGCACAGCTCCCCCCGGAGCGACTTCACCGCCGCCCCGTTCGCCAACAACCCCACCACCAACAGCACGCAGCCCCCCGCCACCGGGACCTCGCCGCCCGAGGGCTTCGTGTCCCACAGCCTGCAGACCAACGACGTGGTCATCCACCGCAAGGAGAACGAGGGCTTCGGCTTCGTCATCATCAGCTCGCTGAACCGACCCGAGAGTGGGTCTACCATCACTGTGCCCCACAAAATTGGCCGGATAATCGAAGGCAGCCCGGCGGACCGCTGCGGGAAGTTGAAAGTGGGCGACCGGATCCTGGCGGTGAACGGCCAGTCCATCATTAACATGCCGCACGCCGACATCGTCAAACTCATCAAGGACGCCGGCCTCAGTGTGACTCTGCGCATCATCCCTCAGGAAGAGCTGAACAGCCCCGCCTCGGCCGCCAGCTCGGAGAAGCAGAGTCCCATGGCCCAGCAACACAGCCCCATGGCCCAGCAGAGCCCAGtagcccagcccagccctgcCGCCCAGCTCAGCCCTGTGGCCCAGGCGCCCGCTGCTCCTCCGCCACAGCTGCACGGCCACGACAGCAGGCAGGGTTCTTCATGTTGTATTCTTGTTAGCTACAGATCAGAGGTCAAAGCCAGGCAGGATGTGAAGCCCGACATCAGGCAGCCCCCTTTCACGGACTACAGGCAGCCCCCTGTCGACTACAGACATCCCCCCGTAGGAGATTACCGGCAGCCGCCCACGCTGGACTACAGACACCCACCGCTCCTCGACTACAGGCAGCACTCCCCCGACTCCCGGCAGTTTCCCATACCGGACTACAGGCAGCCGCAGGACTTCGACTATTTTACGGTCGAGCTGGAGAAGAGCATGAAAGGGTTCGGCTTCAGTATCCGCGGAGGCCGGGAGTATAAAATGGACCTGTTCGTGCTGAGGCTGGCAGAAGACGGGCCTGCGATCAGAAACGGGAGGATGAGGGTCGGAGATCAAATCATAGAAATCAACGGCGAGAGCACGAGAGACATGACACATGCCCGGGCCATCGAGCTCATCAAGTCCGGAGGCAGGAGGGTGCGGCTGCTTCTCAAGAGAGGGACAGGCCAGGTCCCCGAGTATGACAGCCCAACCCCCTGGGATGCTCCCCCTGCAGCCTCCCCAAGCCTGCCGGAAGTAGCCCCTTCCCTTGACACCATGACCATGCCATTGTCTTCATCTCATCCAGCCCTGCCCTCTGATCCCATTCACCTGCTCCCCCTGGAGCCAGCATGGGACACCAAGGGGGAGCGCAAGACCCCGCACAGGAGGGACGCATCCGCAGGGGGCAAGGAGAGCGGCCGAGCAGTGGACAGAGCCGAGCGCTCGCTGAGCCCCCAGAGAACGGACCCGCTGAGGCCTGGGCAGGCTCTGGGGAAACGGCCTGCGGAGCGGGGCGGGGGCGGCAGAACCGCCGGGGAGGGTGGCAGGTCCACCGCAGGGGGAAGCGGGGCGCAGGGGAAGGGGGCTCCAGGGGCTGCGGCCGCGGCGGAGCAGGACGCAGTCAGTGGAGCCACCCCTCGGAAGCAGGGGCAACCCAAGGCCCCCAAAGCTGCGCGAGGACGGTCCAAGGAGAGGATGGGGGAGAGGGCTGGCAccctggagaggagagagccGGATCAGTCTCTGAGAGGCCCCGGGGCAGACATGAACGGAGGGGCCCAGAGCAATGGCAACAACCCTGGGAGCCCCCCGGAGCCGGCCGCAGAGAAACCGGACAGGGAGCCGGCAAAGGTCACCCAGGGCACCAGCAGCGCAGCCAGGAAGTCCACCGTCTCGCCCGGGCCCTGGAAGATCCCGGGGTCCGACAAGCTGCCCAGCGCTCTGAAGTCGGGCACTTCCACTGTGAGCAGATAA

Function

GO: NA

KEGG:

id description
K05629 AIP1; atrophin-1 interacting protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138043 lncRNA upstream 208643 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 301256 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 398154 7143267 ~ 7143659 (+) True G110201
TU137933 lncRNA upstream 604149 6937244 ~ 6937664 (+) True G110167
TU137927 lncRNA upstream 683815 6855880 ~ 6857998 (+) True G110161
TU138041 lncRNA downstream 16014 7593287 ~ 7633119 (+) True G110243
TU138100 lncRNA downstream 117281 7694554 ~ 7695513 (+) True G110286
TU138195 lncRNA downstream 336577 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 510764 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 555822 8133095 ~ 8135492 (+) True G110439
AMCG00006517 mRNA upstream 51675 7484144 ~ 7490138 (+) True AMCG00006517
AMCG00006516 mRNA upstream 251144 7290004 ~ 7290669 (+) True AMCG00006516
AMCG00006515 mRNA upstream 306674 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006509 mRNA upstream 358710 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006508 mRNA upstream 425056 7109344 ~ 7116757 (+) True AMCG00006508
AMCG00006519 mRNA downstream 74517 7651790 ~ 7652194 (+) True AMCG00006519
AMCG00006521 mRNA downstream 183541 7760814 ~ 7782870 (+) True AMCG00006521
AMCG00006525 mRNA downstream 230281 7807554 ~ 7812395 (+) True AMCG00006525
AMCG00006530 mRNA downstream 241399 7818672 ~ 7830030 (+) True AMCG00006530
AMCG00006528 mRNA downstream 269696 7846969 ~ 7858791 (+) True AMCG00006528
TU137929 other upstream 629559 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 953414 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1558904 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1558904 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 2412984 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 76399 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 598487 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1145177 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1988940 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5433911 13011184 ~ 13043448 (+) True G111197

Expression Profile