RNA id: AMCG00006519


Basic Information

Item Value
RNA id AMCG00006519
length 405
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00006519
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7651790 ~ 7652194 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGAATGTCCCTGGCACAGAGAGTGCTGCTCACCTGGGTCTTCACTCTGGTCTTCCTCATCATGCTGGTGCTGAAGCTGGACGAGAAGGTGGGCTGGAACTGGTTCCTCATCTTCCTGCCCGTGTGGATCTTCGACGCCATCCTGCTGCTCATGCTGGCGGTGAAGATGGCGGGCCGCTGCAAGCCGGGCTACGACCCCCGCCACGGCTCGCAGAACCTGAAGAAGAAGGCCTGGTACCTGGTGGCCATGCTGCTCAAGCTGGCCTTCTGCCTCACGCTGTGCGCCCGGGTGGAGCACCTGACAGACATCAAGCTGGTGTACGTGTGCATCCCGCTCTGGGCCCTCCTCGTCGGGGCCATGGTGGAGCTGGGCTGCAACATCTTCCAGGACCGCAGGGACTAG

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko03030 DNA replication
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138041 lncRNA upstream 18671 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 318620 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 411233 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 508131 7143267 ~ 7143659 (+) True G110201
TU137933 lncRNA upstream 714126 6937244 ~ 6937664 (+) True G110167
TU138100 lncRNA downstream 42360 7694554 ~ 7695513 (+) True G110286
TU138195 lncRNA downstream 261656 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 435843 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 480901 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 521134 8173328 ~ 8175573 (+) True G110444
AMCG00006518 mRNA upstream 74517 7541813 ~ 7577273 (+) True AMCG00006518
AMCG00006517 mRNA upstream 161652 7484144 ~ 7490138 (+) True AMCG00006517
AMCG00006516 mRNA upstream 361121 7290004 ~ 7290669 (+) True AMCG00006516
AMCG00006515 mRNA upstream 416651 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006509 mRNA upstream 468687 7149305 ~ 7183103 (+) True AMCG00006509
AMCG00006521 mRNA downstream 108620 7760814 ~ 7782870 (+) True AMCG00006521
AMCG00006525 mRNA downstream 155360 7807554 ~ 7812395 (+) True AMCG00006525
AMCG00006530 mRNA downstream 166478 7818672 ~ 7830030 (+) True AMCG00006530
AMCG00006528 mRNA downstream 194775 7846969 ~ 7858791 (+) True AMCG00006528
AMCG00006532 mRNA downstream 220880 7873074 ~ 7877171 (+) True AMCG00006532
TU137929 other upstream 739536 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1063391 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1668881 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1668881 5981196 ~ 5982909 (+) False G110023
TU137492 other upstream 2522961 5127357 ~ 5128829 (+) False AMCG00006459
TU138093 other downstream 1478 7653672 ~ 7655194 (+) True G110279
TU138304 other downstream 523566 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 1070256 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1914019 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5358990 13011184 ~ 13043448 (+) True G111197

Expression Profile