RNA id: AMCG00006521


Basic Information

Item Value
RNA id AMCG00006521
length 2504
RNA type mRNA
GC content 0.54
exon number 30
gene id AMCG00006521
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7760814 ~ 7782870 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtgtcgtgttcagagagacagtgtgtcgtgttcagagagacagtgtgtcgtgttcagagagagacagtccaCACAGGTAACTACAGCCGCCGCTGCCGGAGTACCGCCTAGTGTCTTACTTTAACCCCACCTGTGTCGGTGCCGTGGGGCGGACCGTGGCCGGGGATGTCCGTCTGACAGGGGGCTGTGCTGAGCTGTTCACACCCCGGGGGAGCCGTGCTGAAGGCCGCTCACATGTTGCATCTGCGCCCGACTCTTGATCTGCGGCGGGATGTGATGCCCCATGTCCTGAGGAAGGACGAGCCGCCCGGGACAGGAGAAGAGAGCCCACTGAGTGCTGCGGCGCTGCGGGTCGTCAACACGGAGCGGGACGGCAGGGTGCTGTACTGCTGCCAGGGCGCCTCTGGAAACACCAGCATAGGAAGATACGACCCTCGCATACAGCAAAACAAGCTGCTGTACACTTTTGACAAGGAGGTGTGTGTCAGCAGCGCCTCAGTAAACAGGGAGGCGACGCTGCTGGCTGTCAGCCTGGTGCAGAAGCTGAGGCGGGAGACGCACAGGGAGCCCCTCAGAGCAGGTTCAAAATGTTTGACCCTTCTCATCGAGATCCACCCAATAAACAATACGAAAGTCCTGAAAGCAGTTGACTGTCGCATAAGAGTGCAGtttttgtatCCGGACACGGACAAGAACTCTGTTCATGAGAGCCACTTGCTGCTCATTTCTGAAGACAGCTATGTTGAGCAGTTCCATATCAACTTGGTCCAAGAAGAAGGATACAGGGTGGTCATTCAAAACCCAGCCCGCATCCCTAAAGATAAAGTGGCAGAGGATTTCTCCTGGGCACAATGGGACGCACACACTCAGAGACTTTTCTACCTGACCTGCCGGgaAAAATCAGTGCTGAAATGTGTGCAGTTCTACCCTGACTGTATCTGTGAAACTCTGTTTGAGCTGCCTATGGATTTGCCTGCCAGCCCGTTTGCTCCCGTGAGGTTTGTTAACTTCGGTTGTGATCATTATAAAGACGAGGAGCTGGTGGCAGACGAGGCTCTGAATCTGGTTGTTCTCACAAGTAATACAGGAAGCATGTGCATTTGCTACAGTAAGCCAGTGCAAGCCGATGAAGACGTCACGTACACAGTTGCGTTTGTGCACAGAGGGTACAGCAAGACATTTACAGTCGCGATGGAAGGAGCGCCAAGACCCCCAAGAACGGACCTGCTTTTCATCAGCTTGGATTACTACATAGCGGTGTGTTTGCCTGGTTGCTTCCTGCATCTGATCAACTCCAGACAGCCGGACCTGGCGTGCCACAGCCTCTTCCTGTCAGTGGAGCTGCAGATCATACACTGGATATGTGACAATGTGATGAGCTACGACCGCTTTGATCAGATTCAGGAGTTCATGCTGACATCGTTGTACAGGAGGATTTGGCAGCAGTCTGTCAGTCTGGATAAGGTCCTGCCCTATTCCTCGATCTCTCACTGGGAAGAGACGAGGCATTTAAAGGGTTATTGGGAAGAGCTGCAGTGGAACATTGAGACCATGAAGTACTTTGAGGCGGTCCCGAATCTGAGATACAGGACCACCTTCGTCAGCGAAGAGTGGAATAAGCTATTGGCTGAAAGGGGCTCCGAAGAAAAGAAGCCATCCAACTACTTAAGAAACATCCAAGAGAACACCAAAAAGGTTTTGTCTACTGTGGACACCTGGCACTTAGATAAGAAGCTGGTCCCTCTCTTCCAGGAGGAGGATCACCAGCAGAGGGTGCTGATAGGCCTGATGGTGGACAAACTCAGGGAGCATCTGAACAGACACCTGCATCGCCTGGGCAAGAAGAGGATCGACGGGCTGGTGGTGAACTACGTGGCACAATTGCTGGAGCTGGTCAGACGCATCCTGGAGACGCTGTGGGTGAAGTTTAACCTCCGCTCTCAGCTGCTGTGTTTCAAACAGCAAGGCAGCCCTGCCGAGTGGGCTGTGTTTCATGTGATGAGCCGGGTCTTGGAAGCCGCTAAAGGTCTCTGCTTGCCCCTGCCTCCTGGTTTCAACTCCCTGCTGACGGTGCTGGGCCTGCGCTGCCTGCCCACTCACACCTTCCAGCAGTACCTGGACCATGGCATCCTGCAGCTCACCGAGCCCTTCGTCATGCAGCTGTTCAAAGAGCTGGACAACAGCGACCAGAACGAGGAGCTGAAGTTCAGCATCGTAAAGAGACTGCCAGAGtcTATGGGCCAGAAGATCTATCAGCTCTGGGATCACCCCATCAGCTCGGCCTGCATCGCCAGGAACTACGTTAGAAGCCTCTTTGTAAAGCTCGAGAAAAAGCAGGGGACGACCCGGGCAGAAAGGGACAGGTCTTTCTTCCAGTCCGAGTTCATGCCGCTCAGCTACTTGACCAAAACCCTTTACGACGAGCAGGAGAACGTGGATGCCAAGTTTGTTGAAGAAATCGCTCTGAAGCAGACTTTCCTCATGCTGGGCTTTGAGGACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138100 lncRNA upstream 65301 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 127695 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 427644 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 520257 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 617155 7143267 ~ 7143659 (+) True G110201
TU138195 lncRNA downstream 130980 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 305167 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 350225 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 390458 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 391371 8174241 ~ 8175182 (+) False G110444
AMCG00006519 mRNA upstream 108620 7651790 ~ 7652194 (+) True AMCG00006519
AMCG00006518 mRNA upstream 183541 7541813 ~ 7577273 (+) True AMCG00006518
AMCG00006517 mRNA upstream 270676 7484144 ~ 7490138 (+) True AMCG00006517
AMCG00006516 mRNA upstream 470145 7290004 ~ 7290669 (+) True AMCG00006516
AMCG00006515 mRNA upstream 525675 7226133 ~ 7235139 (+) True AMCG00006515
AMCG00006525 mRNA downstream 24684 7807554 ~ 7812395 (+) True AMCG00006525
AMCG00006530 mRNA downstream 35802 7818672 ~ 7830030 (+) True AMCG00006530
AMCG00006528 mRNA downstream 64099 7846969 ~ 7858791 (+) True AMCG00006528
AMCG00006532 mRNA downstream 90204 7873074 ~ 7877171 (+) True AMCG00006532
AMCG00006534 mRNA downstream 113317 7896187 ~ 7899991 (+) True AMCG00006534
TU138093 other upstream 105620 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 848560 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1172415 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1777905 5979062 ~ 5982909 (+) True G110023
TU137766 other upstream 1777905 5981196 ~ 5982909 (+) False G110023
TU138304 other downstream 392890 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 939580 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1783343 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5228314 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 13154627 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile