RNA id: AMCG00006528


Basic Information

Item Value
RNA id AMCG00006528
length 1770
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00006528
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7846969 ~ 7858791 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTGCTCTCAGTCCTCGGCGAACGAGCTGAGCTCTCATGACAGAACAAAGGGACGCGCAAAGGACCAACCTGCGTGCAGCCTGACAGGTCCAAATAGATGATTTTGTGGCAGCCTTTCCCGGTGACCAGggcgCACAGCTGCAGCTCATCTCTACTGGAGCCAATTACTGTGGGCTATCTGAACTCCACTTCCAGAAGGGTTCCTTCCCGTTTGCAGCTGTCACCAGTGACCAGTTTCAGCTGGATCCCACAATGCAAGTGATTACCGCAGTGCTGCTGGTCCTGCTGCTCCTCGGGTCTGCCGAGCTGAAAAGGATGAGAAGCGGCGGCGGCGGTGGGGGCAGGAGCCGGTCCAGGGGCAGGTGGGCCGTGGCCAAGCGCTTTGCCGAGCAGGAGTGTAAAGATTACTCTGAGCTGGGGGAGATGTTCCTGGACTGCCAGGAGAAACAACTGACTGAAGTCTACCCTGGGTGGTCGGAAGACACCGTTCACTTGCTGCTGGCCAGGAACCGGATCCGAGTGCTGAAGGACAATGCCTTCGCGCAGTTCAAGAATCTGAAGAGCCTGGACCTACAGCAAAACGATCTCTCGGTGATCGAGGAGTCCGCCTTCGCCGGGCTGTACCGCCTGACCACGCTGCTGCTCCAGCACAACCGGCTGCGCGTGGTCTCCGAGGAGGTGCTCATCTCCCTGCCGCGGCTCAAGTACCTCCGCATCTACGACAACCCTTGGAGCTGTCAGTGCGATCTGGAGAGCTTGGTCAGGAAGCTGCAAGTCCCCAGCAACCGCAACCTGGGGAACTACGCCAAGTGCACCGAGCCCGCTAACCTGAAGGGCCAGAAGCTGAGGAAGCTGAAACCGGAGCTGCTGTGCCCAGAGCTGGAGCCTCAAGAGCCAGGGACAAAGATGCCAGAAGCTCCAATCAAAAGGAAGAAAGAGCCCGACTCCACGACCTGCAACACCTACATGTTCCCCAAGCCGCTGCTCGATTGCCACGGCAGAGATATCGTTAAAATTGACCTCTCAGGAAACAGAATCAAGCAGCTCAAATCCAAGGAGTTTACTGATGTGAAGGACCTGAAATTGCTGAACCTCAGTAGCAACAACCTGGACTATATtgacacagCTGCCTTTAATGGGCTTCTGCATCTGCGAGAGCTGGACCTCTCCAACAACAGTTTGCAGTTCTTTCAATATGGAGTTTTGGAAGACCTGTACTTTGTCCAGAAGCTGGCACTGGGCAATAACCCCTGGAGATGTGACTACAACATTCACTACCTGATATACTGGCTGAAGCTTCACTTTAACGTGCATTACAGCGGCCTTGTTTGTAGCTCCCCAGAGGAGTTCAAAGGCTGGCTGGTGGAAGATTATGTCAAAACATACAACGGGGAGTGTCCGAAAGACAAACTGCAAGGGCAGGGTGAGAACGGCGTGGAACTCATTGCAGATGCTGCGGACGACGAGGAAATAGATTATCAGCCCCAGCATCTAAGAGCACCCAAGAAATTTAACATTATCAGATTGAGttaaaaagaaacagcaaaaaacaatgtaaattacctttcccacccccccccccaagttttttatgtttttgtctaGAAATATCCAAATCAGTCTGTATCAGATGACAAcctgcttcttttttttaagaattttcATTCCCTCCCTATTACTATGACTAGTGTGTTGGAGGCtgggtttgttgttgttgttgttgtaatatttCATACTGCacattattcatatataaagtttttttttca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138100 lncRNA upstream 151456 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 213850 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 513799 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 606412 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 703310 7143267 ~ 7143659 (+) True G110201
TU138195 lncRNA downstream 55059 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 229246 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 274304 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 314537 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 315450 8174241 ~ 8175182 (+) False G110444
AMCG00006530 mRNA upstream 16939 7818672 ~ 7830030 (+) True AMCG00006530
AMCG00006525 mRNA upstream 34574 7807554 ~ 7812395 (+) True AMCG00006525
AMCG00006521 mRNA upstream 64099 7760814 ~ 7782870 (+) True AMCG00006521
AMCG00006519 mRNA upstream 194775 7651790 ~ 7652194 (+) True AMCG00006519
AMCG00006518 mRNA upstream 269696 7541813 ~ 7577273 (+) True AMCG00006518
AMCG00006532 mRNA downstream 14283 7873074 ~ 7877171 (+) True AMCG00006532
AMCG00006534 mRNA downstream 37396 7896187 ~ 7899991 (+) True AMCG00006534
AMCG00006535 mRNA downstream 48903 7907694 ~ 7911362 (+) True AMCG00006535
AMCG00006531 mRNA downstream 77592 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006529 mRNA downstream 96235 7955026 ~ 7966534 (+) True AMCG00006529
TU138093 other upstream 191775 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 934715 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1258570 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1864060 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 316969 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 863659 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1707422 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5152393 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 13078706 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile