RNA id: AMCG00006529


Basic Information

Item Value
RNA id AMCG00006529
length 6250
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00006529
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7955026 ~ 7966534 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaagccaAGCAGACACGGCAacgaaagagaaaaacaaacgcCAAACCTCCCCATGAACAGCAGTAACGCACAGGGAGCCCTGggaagctttttatttatttatttgataacacatgcattttgtgaaattgtgaaaaagTGACACTTTTCAGCAGGCAGGAAGAAGCGAACCGTGCGGATCAGATTTCAGCGTTTCAGACTCTTCAtgtcaaaagttttttttcttccaccaaAAAAAGTGGGGGGATGGTGGAAGTGGCTCTTTCTGTAAAGTGATCTAACTCAACAGGACGGGACGAGATCTTTTCAACCCCGATGTTGTGTTTTCCGTTAAACCTAATCCCGTTATAAATGTGGCAGAAGAGGGAAGGATGAGGAGTGACCGAAAGGAGTGAATGAGGATTGATCCCGGGCTGGGACAGGGAGCAGAGTTGCGCCGCACGGAGAGACACTGTTTCCTTTCATGGGAGTTGAGGATGCATCTGCTGGAGATGTTTCTCCTAATGTCACTAAGTGTATCTTTGTAACACAATAACCGATACTGCAACTTGTGGAGTTCGGCTCAATCCTCTGAAACAAGAGTTGCGAGGCTCAAGCTTTCCAAGATGTCCTCCCGAGTCTGTCCCTTTGTTGGGAGATGCGGGATGCTGCTGCTCTGGGGTGCCTACTTCTTGCTCGCCCGTGTGGGCACGGCACAGAAAAACGACACGGGGGTCCTGGATTATTGTCAGAAAAGTTCAACCTGTGAAGTCCTGAAGTACAACACCTGCCTGGGCTCCCCGCTGCCCTACACGCACACCTCCGTGCTCCTGGCCGAGGACTCCAGCACCCAGGACGAGGCTTTCGAGAAACTGGCCATGTGGTCCGGTCTGCGCAATGCCCCTCGCTGCTGGGCCGTCATCCAACCCCTGCTGTGCGCCGTCTACATGCCCAAGTGTGACAACGGCAAGGTGGAGCTGCCCAGCCAGAGCCTGTGCCAGGCCACCCGGCGCCCCTGTGCCATTGTGGAGCGTGAGAGAGGCTGGCCAGACTTCCTCAAGTGCACTACCGACAAGTTCCCTGTGGGCTGCCAGAATGAAGTCCAGAAGATCAAGTTCAACGCGTCGGGCCACTGCGAGTCCCCGCTGGTGAAGACGGATAACCCCGCTAGCTGGTATGAGGATGTGGAGGGCTGCGGCATCCAGTGCAACAACCCACTATTCACCCAGGAGGAGCACAGCGACATGCACGTCTACATCGCCGTGTTCGGCTCCCTCACACTCTTCTGCACCTTCTTCACACTGGCCACCTTCGTAGCCGACTGGAAGAACTCCAACCGCTATCCCGCCGTCATCCTGTTCTACGTCAACGCCTGCTTCTTCATCGGCAGCATCGGCTGGCTGGCCCAGTTCATGGACGGAGCGCGGCAGGAGATCGTGTGCAAGAGCGATGACACCATGAGGCTCGGGGAACCCACGTCCACGGAGACGCTGTCCTGCGTGATCATCTTCGTGATCGTCTACTACTCCATGATGTCGGGGGTCATCTGGTTTGTCATGCTCACCTACGCCTGGCACACCTCCTTCAAGGCCCTGGGCACCACTTACCAGCCTCTGAGCGGCAAGACTTCCTACTTTCACCTCTTCACCTGGTCCATCCCCTTCGTGCTGACTGTGGCCATACTGGCAATCAAACAGGTGGACGGAGACTCGGTCAGCGGCATCTGCTTTGTCGGCTATAAGAACTACAACTACAGAGCTGGGTTTGTGTTGGCTCCCATAGGTGTCGTCCTCGTCGTGGGGGGCTATTTTCTCATCCGAGGGGTCATGACATTGTTTTCGATTAAGAGCAACCACCCAGGGCTGCTGAGTGAAAAAGCTGCAAGCAAAATAAACGAGACAATGGTCAGACTAGGTATATTTGGATTCCTTGCctttggctttgtttttattacgtTTGGCTGCCATTTCTATGACTTCTTCAACCAGGCGGAGTGGGAGCGCAGTTTCAGAGAATATGTCTTGTGTGAGGCGAATGTGACGATTGCGGTCCAGACCAACAAGCCCATCCCCGAATGTGCCATTAAGATCAGGCCCAGTCTGCTGGTGGTGAAGATCAACCTCTTCGCCATGTTTGGCACCGGGATCTCCATGAGCACCTGGGTGTGGACCAAGGCCACCGTGCTCATCTGGAAACGCACCTGGTGCAGGATCACCGGTCGAAGTGACGACGAGCCCAAGCGCATAAAGAAGAGCAAGATGATCGCGAAAGCCTTCTCCAAACGCAAGGAGCTGCTGCGCAACCCTGAGAAGGAGCTGTCCTTCAGCATGCACACCGTCTCCCACGAGGGGCCCGTGGCTGGTATAAACTTTGAGTTGAACGAACCGTCAGTGGACATGTCCTCTGCGTGGGCCCAGCATGTCACCAAAATGGTGGCCAGGAGAGGAGCCATTCTGCCACAGGATATCTCCGTCACCGTCACGGGCACACCAGTGCCACCCGATGACAACATGAACCAGCTGTGGATAGTGGAGGCAGAGATTCCCCCGGAGCtgcagaaaaagaagaagaaaaagcgGCGGAGGAAGAAGGAGGTGCGTCCCCTGGCGCCCACAGAGGAGCTGTGTGACCTGGGCCGCCGGGGGGAGCGTGCCCACAGCGCAGTGCCGCGCCTGCCCAAGCTGCCCGGACACCGCAGCCTGGTGGCCACCGTGCGGGAGCAGCACCCGGAGGAGCTCCTGCCCGGCTCCTTCCCCGAGATCAGGCCCAGCACGCCCCCGCCGTCCTACCGCTCGGACAACCGCCGGTACCCTGCGCTCGGCGTGCCCTACGGGGACTGGGCACGGGAGGACCACGACTTCTCCAGCAGCACTCGGTTCCGCCCCCCACCCCGGGATTGCAACGGCATGTTCCGCCACTCGGCTGGGGAGGGTACGCTGATGGCGGGCAGCTCGGGGAACGTGCCCTACATCCCCAGGACTCAGGGCAGGAGAGCGGGCCTCGCGCCCATCCACTCCAGGACCAACCTCATGGACGCACAGCTGATGGACGCAGACTCTGACTTctgaggggagaaaaaaacactacaaTACAGTGAGGGTGTTTGTACAGTTTGTGAGGACGAAGTGCTGGATACTTTTAGACTTGCTCCCACTTGGCCATCTAAGAAGAGGAAAGTAACATAGTCTTGACCTAGATAAGTGCTTCCtgggaattaaattaaataataaaaattgtaataaaggGAAGGGTTGCAGGTAACCCCTTCAGACTACCAAAAATGACAAGTCCTGTTTACTGTGGTCCATTTACACAGTGGTAACGTCATAATATGCTGGAGTGCTTTTTACAATCAGCTTTTAAACCTTTTACTTGCAGCTGTCCATTTTTGTTACTCcatgaataacaaaacaaatcccacTGGAGTGTTTCTGTCTCATGAACAGCAGAGGAAATCTGACAAGGTGGcccatgaaaatgaaatgtaccgAAAACTCGATTCGACCTGTTTGGTGTGGATCTATAATGTTTGTTCAGATGGATTAATTTCACGTCGTGATCCGCTGCTGAAGAGGAAACCTTCTCTGCACAAGACCCTACCCAGCTTAGCGGAAACTAAGCACTGTTGTGTGTTAATGGATTAATGTCCTCTCCGGCACCGAAAAAACACACTAGCTTTTGCTCAAcctcttttattttgttgatgttgaGTTTGGAGTGTTACCTGCAATATCTAGTGCTCTAGAGGGCAAAAACATTTAGGATAAAATGTGCTTAACCGCTTACAATTGCTGAACTTCAGCAACAGAGGAAATTCTTAAAGGGGAGTAAAAGCCAAGTAAACTTCCTCAgattctgatttaattttccaATAGAAAAACAGGTAAATAACTTGTTGGTGGATTAACTTtttaatataagtatatatattatagtctTCTGTTGGACGCATTTCAGTACAAAACAACGTTTGACACCGATTCGTATTCATTTAAAGGGACCAGCTTTTTCAAATACACCAATGTTGGATACAAAAGATTTGAGTTCTTGCTAGTTTCTTCCCAATGGTCCCTCAGTGACTTGACAGTGTGCCTGGTAAACCTACAATGGTGGGTTGGACGTATCTACCACCTGTTCTATGGTCTGTACTACTTCTATGAACATGGTGAATTCACTGCTATTGCTATTGTGATGTTCAGAAATCTAGTGCCAGGCCACACAAGTGATCCTGTGATAGTACAGGAAAGGGAAAGCTTGTCCTTCCTTCTTTCTTAGGTAAGGAAGACAGCGGCTCTAATGCATAGATTGTCTTCAGACTCACAGTGCGTCCCAACTCCGCAAGTGCCATGCAAGCCTACCAGTGTCATTTCATAGAGAGGCATATGAAGTAAGAGTATGTTGCGCCTCTCCTTTgtttcactgtatatatttctggTTCATTTCAGCCGCACTCTTGATACACAGTATTGTCTAAGCTAAGTATAGTTCCTCTTGTGTTTTCGCGAGGAACTGCGCTCTGCTCTTGAGCTATGCGAAGGGTTCACGTGGACTACTATTGCTTTGGCATTGAACTGCACAAGCCAGCTATCAAAATGTTGTGTTATATCTGGAGAAATCACTCATCCGTTCACTTTTTGTGCATTAGGGCACCTCATTACGGGGAGCATCATGTTGCAGTACTTCACAGTAATGCAgtaacagtatttattaaaactaaaaggtcttaattgcttttACTAAATTATACAACAGTAGAAACTaatggtattttgttttaatccgatttatttatatagctgTCATGCTTCTGTAGTTCCCATGTCTTTCAGGATTTCATTACTATCAGGTCCATGCAAAAGATGTAAGATAAggacttgtttttgttttctgcctgtagatagagagggggagagatagagagatgtTTACAATGACTTCAGAATGCAGCATACATTTCCCCATCATCCCCCAAACCTTATGGAGGCGGTTTAGTTGTTATATTATGAGGTACTCAGATCACAAACATTGGCATTACACTGTACATATAATTAACTCATAATATAGggatgaaaaatacatatacattatttgacCATCTTTATCTTTTCATTGTTTCCATAGTTgctgattgttttaaaatcatgcATTACTTCGGTATCCTAAAGTACAGGCAGTTCACAGCTCTCAGCCACGCATTTTTGACCggctttaatatatatttatatgcactAAAACCTTTTTTGTGATTAAAGTATTTATCTGCAGGATTATCAAACATAAAGTTCAATGCAATGACATGGAAGCTAAATGCTATTGTAGCCCCCAAAATTGCAGTAATCCAAAAGGTGATCTTCTTCACAGcactttacattaaaaaaaacatcaagaacTCAAGTCGCAATGGTGatggtaaacaaaaacaaaatgctcatTGCTGTGGGCCAGTATTATTTAAGTCAACCCAGGGTAATTTTGGACATACGTTTATATATCACCATTTTCTACAAACAATTTTTCCTTAGGATTAGGGTGATTCAACTTCTATTAACCTTTTCTATCTCACATTTGTagaaatttgtttattttttgaatgacaCTTCTAACGAATGTGTTCATCCGGATCAGTTCAGCCAGTGAAAGAgtatctgtgtctctctgggACGTTGAACATGACCAGATCCcacacaacattttttgttggcTTTCCCCCCAAAATGAATTGTGCCAACTTGATCAAAGCATGGTCGTATTGTTTGGGCATGGGATCCTAATATAATATTCAACACTGTGTGATTGATTAAATTGGTGTACATCTGGCCAGTTCCCAACATTGTTACAAATACTCTTTATGTGTTAGTGATTAACCattgaaatgtctttgtttgcCTTTAACATTTCAATATCATATTATGTAGGTGTGTGGAAAAGAGTAACACATCCTGCAGGATCAGAGTTTTAAAAGATCTATTTACTGACTATTGAGCACATTCAGTAAACTTGTATTTTCCATGATCAGAAGTATAAATACTGAGAAAATGGCAGCTGTAGAAGATTCTAACTGTAACACTGAACAGCAATGTagagttttcctttttcttttttaataaggAATGATGTGGTAAAGTTTTACACAACATGAAAATGGTTTCTTGCCTACTGTTGTTACTAAAATCTTTTTCTGCTATTAATCTtattaaagatgttttttttattcacagtaTTGTTAAAAGGCTATCactcaattgtatttttgtatgtgtaaataaac

Function

GO:

id name namespace
GO:0021523 somatic motor neuron differentiation biological_process
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0042693 muscle cell fate commitment biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0008406 gonad development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0021537 telencephalon development biological_process
GO:0021798 forebrain dorsal/ventral pattern formation biological_process
GO:0048745 smooth muscle tissue development biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0021561 facial nerve development biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0001755 neural crest cell migration biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0048795 swim bladder morphogenesis biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0002052 positive regulation of neuroblast proliferation biological_process
GO:0031018 endocrine pancreas development biological_process
GO:0002053 positive regulation of mesenchymal cell proliferation biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0042475 odontogenesis of dentin-containing tooth biological_process
GO:0051216 cartilage development biological_process
GO:0007283 spermatogenesis biological_process
GO:0048557 embryonic digestive tract morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0060956 endocardial cell differentiation biological_process
GO:0050679 positive regulation of epithelial cell proliferation biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0021904 dorsal/ventral neural tube patterning biological_process
GO:0021910 smoothened signaling pathway involved in ventral spinal cord patterning biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0030239 myofibril assembly biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0001570 vasculogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0003231 cardiac ventricle development biological_process
GO:0035912 dorsal aorta morphogenesis biological_process
GO:0021938 smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation biological_process
GO:0031102 neuron projection regeneration biological_process
GO:0021696 cerebellar cortex morphogenesis biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0035143 caudal fin morphogenesis biological_process
GO:0010002 cardioblast differentiation biological_process
GO:0021984 adenohypophysis development biological_process
GO:0001649 osteoblast differentiation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0048702 embryonic neurocranium morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0060830 ciliary receptor clustering involved in smoothened signaling pathway biological_process
GO:0021508 floor plate formation biological_process
GO:0035479 angioblast cell migration from lateral mesoderm to midline biological_process
GO:0060844 arterial endothelial cell fate commitment biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0043025 neuronal cell body cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005929 cilium cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0030165 PDZ domain binding molecular_function
GO:0042813 Wnt-activated receptor activity molecular_function
GO:0017147 Wnt-protein binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K06226 SMO; smoothened

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138195 lncRNA upstream 40198 7913850 ~ 7914828 (+) True G110361
TU138100 lncRNA upstream 259513 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 321907 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 621856 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 714469 7240086 ~ 7240557 (+) True G110240
TU138275 lncRNA downstream 121503 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 166561 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 206794 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 207707 8174241 ~ 8175182 (+) False G110444
TU138303 lncRNA downstream 207707 8174241 ~ 8175573 (+) False G110444
AMCG00006531 mRNA upstream 4046 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006535 mRNA upstream 43664 7907694 ~ 7911362 (+) True AMCG00006535
AMCG00006534 mRNA upstream 55035 7896187 ~ 7899991 (+) True AMCG00006534
AMCG00006532 mRNA upstream 77855 7873074 ~ 7877171 (+) True AMCG00006532
AMCG00006528 mRNA upstream 96235 7846969 ~ 7858791 (+) True AMCG00006528
AMCG00006533 mRNA downstream 1457 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006539 mRNA downstream 27397 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006540 mRNA downstream 60156 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006546 mRNA downstream 256347 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006551 mRNA downstream 677708 8644242 ~ 8660293 (+) True AMCG00006551
TU138093 other upstream 299832 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1042772 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1366627 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1972117 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 209226 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 755916 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1599679 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5044650 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12970963 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile