RNA id: AMCG00006531


Basic Information

Item Value
RNA id AMCG00006531
length 2551
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00006531
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7936383 ~ 7950980 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAGCGATCAATCAGGAGGGGTGCATGTAGGATGAGGGACGTGATCTCACGCCTCTGCCTTCATCGTTTTACTTATTCTGTTCTTCAGCCTGTCTGTCCAAAAGGGGAGTAATAGTGGCAGTGAAAACGGGCTCTCTCACCAAGGATCATTGCACCTTGAGGAAGCATCTGAATCTGCAGCTGACTGTCATATCTGTCTGCTTTAGATCATGGCAAGGAGAAACATGACCGAGTTCGATGAGGATTTCACTTTTGTCAGCCCCGTGGtgaaatatttgctttttattttcaacatgatATTTTGGATGATCTCACTGGTGATGATTTCAATTGGCATTTATGCCAGACTAATGAAGCATGCAGAAACGGCGATGGCCTGTCTGGCTGTGGACCCCGCCATCCTGCTGATGGTGATAGGGGTGTTAATGTTCCTGATCACTTTCTGTGGCTGCATCGGGTCCCTGCGAGAGAACATCTGCCTCCTTCAGATGTTTTGCGTCTGCCTGACTATAATCTTCCTGCTGCAGCTGGCGGCTGGAGTCCTGGGGTTTGTCTTCTCTGATAAGGCACGGGGGAAAGTGAGTGAGATTATCAACAATGCTATTATTCATTACAGGGATGACCTGGACCTGCAAAACCTTATTGATTTTGGTCAGAAAGAGGGGATGCAGGACTTGGACTACGTGAGGGCCGGCGCGTTCATCAACACCAACGGCTGCATCGATAAACTGGTCAACTGGATCCATGAAAACCTCTTCTTGCTGGGGGGCATCGCTCTGGGGCTCGCCATCCCACAGCTGGTGGGGATCCTCCTGTCTCAGATCCTTATTAACCAGATCAAAGACCAGATCGAGCTGCAGAAGTACAACCTGCAGCACCGCTCGGACCCCTGGCGCTGACGCCGCTGAGGAGCCACGTGGCGACACGCAGGCACTGGCCCTGGGGACCGCTGCTCCTCTGTTGACTATTGTAGGTATTTCATCGAGGACAAGATTTTAACTTTTCAGGAGATGGTCTGAGTGCTGAGGGATGCGTCAAGATGGATTCTTGGTCACCCTGTTTTTTTCAAGCGATGTCACAAACGGTGGTGAAGGACGACCTCTGAGTGCGATCAAAGCCGCGTGTCACACACAACGCAGACACCGGTGGCTGGCAGTATGCTGTGTAAGGTCGAGCTCCAGAGATCGACAGAAGCTGGGAGTTCCCCACAAAGCCATCCGGCTTCCGGGGAATTCTGTCCCCTGCCTGATCCGAGACGCTATCCAAGAGTCGCATTAAAGCACTGGACAATAACTAACATAGAGGGAAAACGGACACTGCATCCCAGCAcctggaaagaaaaggaaaaaataaattgaccaCTCTGATCAGGGgatcaaaattaataattcttATATCAAACTCATCATTCTAACATTGGTGTAAATAAACTGATGGAAGACAACAGGTGGAAACTGAATACAAAGGACAATAATCTCACTAAACCTTTACACTAACGCATATTAAAGTGTCTGTTGTTCTGGATCCACATGTAAAGTTTGGTGTGAAGAGTGGGCGGCTCCTCTGTGCATATTCCCAGCATCCCTCAGACACTGCCCTTCCTTGCACACGTGTCTCAAGTGCCTAAATAGAATGAAAGTGTATAATGCACAACAAATCAAAAGTGCTGTCTGGTAGTCCTTGCATCACTGCTTTAGAATATGTTGCCTACTCTTCTcaacatgattattatatatatttgactttgCCTATTATGtagatattttgtattacattttatctaTTACCGTTTAATGCTACTTTAGATGAGTTCTGTGCGTGAAGCAGTTCCCCGAGGTATCCTGGACACCCGTGgctatttattttagatcactTAGTTCAGTGCTGCATTTTTAAccacattatttataataatgtagcTAATGTCCATTTCTCTAGAATGTACAGCTATGGTGCCTTTGCCAGCTCTGGACAAAAGCGGTTTATTTAATTGAgctaaattatcattttttttatgtatcctGATCTTGCCATTTGTTATACTGGCAACCTGCATATTGTAATTATAgggaatatattacattaacGCACTATTTGCTAATTACTGAGGCCTCACCCCAATCAAAACTGCCCTGGGTGCAAATTTCAAATTGCAAACCCAATCACAGTGTAATTTATTGTAAGCAGCCATTTTCTACTGCTTAATATAAACTCGAGGGTACAAGCTGTAATTTGAGATCTGCAGGTAGGCCAATGTTATGATCTGGGCTGagactaaaattaaaataatgtttttgtgttgctgGAGCTCTGTGtcttattttgttgtctgtaaatagaaatgtatttccGATGTGTCTTTCAGGCAGATCATATGGCTGAATGGTCTGTCTTTTTCTTGGAGGTCTAGAGCAGTCGTGTTACTGCTTCTACAGTTTTATGTGCTAATATAATgttcatgataataataagtgtttttattctgtccaaatgtattttccaataAAGCACGACATCATGATAGCAGTTTTGGAGTTGGAAGTAGATGGA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K17346 TSPAN33; tetraspanin-33

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138195 lncRNA upstream 21555 7913850 ~ 7914828 (+) True G110361
TU138100 lncRNA upstream 240870 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 303264 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 603213 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 695826 7240086 ~ 7240557 (+) True G110240
TU138275 lncRNA downstream 137057 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 182115 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 222348 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 223261 8174241 ~ 8175182 (+) False G110444
TU138303 lncRNA downstream 223261 8174241 ~ 8175573 (+) False G110444
AMCG00006535 mRNA upstream 25021 7907694 ~ 7911362 (+) True AMCG00006535
AMCG00006534 mRNA upstream 36392 7896187 ~ 7899991 (+) True AMCG00006534
AMCG00006532 mRNA upstream 59212 7873074 ~ 7877171 (+) True AMCG00006532
AMCG00006528 mRNA upstream 77592 7846969 ~ 7858791 (+) True AMCG00006528
AMCG00006530 mRNA upstream 106353 7818672 ~ 7830030 (+) True AMCG00006530
AMCG00006529 mRNA downstream 4046 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006533 mRNA downstream 17011 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006539 mRNA downstream 42951 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006540 mRNA downstream 75710 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006546 mRNA downstream 271901 8222881 ~ 8244037 (+) True AMCG00006546
TU138093 other upstream 281189 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1024129 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1347984 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1953474 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 224780 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 771470 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1615233 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5060204 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12986517 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile