RNA id: AMCG00006533


Basic Information

Item Value
RNA id AMCG00006533
length 2678
RNA type mRNA
GC content 0.50
exon number 21
gene id AMCG00006533
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7967991 ~ 7981094 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGATGTCACTAGACACGGACTGCAGTCGCAGGCGGAGAAACACGCACGATGCTTTCGAGTTCCCCCAGGACTTGGATCACAGAGCGGAGCCGCAGCACAGACGAAGCTCCCTGTGTGACCGGCTGTGCATATCCAGCCATCACTCGGAGCTCACCGACATCTACTCCCCCGGGAACTCGCACCAGTTCAACGTCTTCACCCCGAGATACATGGCAGGCCAGGGAGtaCAGTCAGTCACTCCGACTAAGTGCCTGCACCGCTCCGGGGAGGTGCAAGGATGCGACGGCTGTGCCATCAAGACCACTCTCACTGCGGAGAACGAAGTGGAGGCTCACCGGCTCGCCAACAACTACAGGtttggatTTAAGAAATGGAAGAGCCATGTCACAGAGAGACCCTGGGAGGACAGATCAGAGATTGGTCTTTGTGTTCTGATGTTTGTGACTGTTATTGGAGCTCCATAtgGTAAGCTCTGTTGGAAATTGGCTTGTTATTTTCTGTGGCCATTTGGCAAGTCAATACAGAAGGCAACCCATCCTCTCAGAAAGTGCTGCCTGAAATTCCCAGAGTGTGAGGCCATACCCGAGGTGGATGAAGTGAAGGAGACCTCCCCGCTGGTGCCGCCCCCGCAGCCTGCGCCAGCCAGGACCCCGGGGACAAGGTCTTGCAAGCCCCGCTACTGGTGCCGGGTCAGCACCTACGTCTGGCTCATCTTGGGGTACCCTGTCCTGTTCCTGACCCACGCCCTGGTCTGCTTCTTCTCCTGGACTCTGGTCTTCACCATTCCCGTGTCCAAGATGAACGCCAGAACCATCAGCATCATCCTGCTCATGCCCCCCGAACTAGTCCGTATAGAAAATCCAAAAAAGACAGAAGTGAGTTCAGAATCGGAGGTGATGCTGTGCTGTTACCGTGCCTTTAATTTCTACTACTACAAGTACACTGTCGACGGGATGAATGTGTTCGCCGTCAACCTGCTGCCTCTCGTCATCATCACGCTGGTGATTGGCTATGCAGACAAGGAGAACCGCTATGCCAGCTCCCCGGTGAAGTTCACCACCGCCATAGGCTCCATCATCCCCCTGTCCTACTTCATTGGCATGGCCATCGCCAGGGGCTTCCGGGAAGGCAACAAGTGCTACGAGGAGATCGTGAAGTCTGCGCTGACCGGGACGCTGCTGGGCTGCATCCTCTTAGTTCCGGGTGTCTGCATGATCATCGGGGGCTGTAAGCACCAGGAGCAGAGGTTTAACAGCCGCTCCGCCGGCGTCGGGTCAGCGCTGCTCTTCATCTCGGTGGGAGGTGTGTTTGCCCCAACGCTGTTCTCCAAGGCCTATGGGAACCTGGTTTGCCAGAATTGTTCCAACACAACTGAGAACGCCACTGGCTCCTTCACCTGCCACAACTGCCACTACGACCTGAGTGAAAATAATTACTCATTGTTTCACAGCCATATCGAGCCCCTGGTTTACTCTGTGTCAGTCCTGCTCCCTGCTGCCTACCTGATCGGCCTCATCTTCACTCTGAAGACCCATTCGCACATCTACGACATTCACATCAGTGACTGCCACGTCCCTGGTCACCAACACATCCCAGTGGTCCACTGGTCACGTTGGAGAGCCGTGATCATCCTCATCATGGCCACACTGCTGATGTCGGCCTGCGCTGACCTGACCACCCTGCACATCGAGCCCATCCTGTCCAACTCCCGGGTGTCTCAGTACTTCATTGGTGTCACTGTCCTGGCTATGATCCCAGAGATTCCAGAGATTGTCAATGGGATCCAGTTTGCCCTTCAGAATAACATCAGTCTGAGCTTCGAGGTCGGGAGCTCTATGGCCGTGCAGGTCTGCATGCTTCAGATCCCGGTCCTGATCCTCTTTAACGTCTTCTACGACGTGGGCTTTGTTCTGATCTTCAGTGACTTGCACCTGTGGGCCAGCATCTTCAGCGTCATCCTGGTCAACTACATCTTCATGGACGGCAAGTGTGACTACTTTCAGGGAACAGCTCTGGTAGTTGTGTACCTCATCCTCCTAGCCATGTACTTCTTTGCTCCCTCCCCTGCTGGCTGCTGAGAAGGAAGTGAAGAGAAACCGCCATCGACGTTGCTTTAGAAAGCGTTATAACTTTTGTTTACAcaagctatatatatttattgataactctttacatttaaaCGTGGGGATTGTTTGTGAATGGTTGTCAAGTTGAATACTAACCTCAGAGTTCGGTACATTATGCAAACGGCCAAGTCTCGGATAATGaaggcttttttttatattaatgttcaaATATTGATTAGGCTATTTTGGCATTTGTGGTAAATGGTTGTTTTTTACAACTTTATTCTCATAAAATGTGTGAATACGgtttatatctatttttaaaatgctgataATTGTCAGTGCAGATTTGTGCACAGTAATgatagcaaaataataaaataactttttgtatttagttcTTTATGCAGCAGTAATGTTTGACACGTGTTTAAGTCCACAAAATCAGGAGCGGTTTTTGGGTGTAGGATAGTTAAACGTATTCGAAGGGAACTGATTCGATGTTCGTGTTATCAAGCTCTGGCTCAGTGGTTACAGGTACTTTCTGAATTTTAACCTGTAGATAGAGATTTTTCACACTGtacaacaataaacacattcttAAAGGTG

Function

GO:

id name namespace
GO:0014032 neural crest cell development biological_process
GO:0006816 calcium ion transport biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K07300 chaA, CAX; Ca2+:H+ antiporter

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138195 lncRNA upstream 53163 7913850 ~ 7914828 (+) True G110361
TU138100 lncRNA upstream 272478 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 334872 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 634821 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 727434 7240086 ~ 7240557 (+) True G110240
TU138275 lncRNA downstream 106943 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 152001 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 192234 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 193147 8174241 ~ 8175182 (+) False G110444
TU138303 lncRNA downstream 193147 8174241 ~ 8175573 (+) False G110444
AMCG00006529 mRNA upstream 1457 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006531 mRNA upstream 17011 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006535 mRNA upstream 56629 7907694 ~ 7911362 (+) True AMCG00006535
AMCG00006534 mRNA upstream 68000 7896187 ~ 7899991 (+) True AMCG00006534
AMCG00006532 mRNA upstream 90820 7873074 ~ 7877171 (+) True AMCG00006532
AMCG00006539 mRNA downstream 12837 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006540 mRNA downstream 45596 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006546 mRNA downstream 241787 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006551 mRNA downstream 663148 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006552 mRNA downstream 729656 8710750 ~ 8722654 (+) False AMCG00006552
TU138093 other upstream 312797 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1055737 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1379592 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1985082 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 194666 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 741356 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1585119 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5030090 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12956403 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053625 True 2610 mRNA 0.46 20 NC_007115.7 14981854 ~ 14990926 (+)