RNA id: AMCG00006534


Basic Information

Item Value
RNA id AMCG00006534
length 1386
RNA type mRNA
GC content 0.53
exon number 12
gene id AMCG00006534
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7896187 ~ 7899991 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCGTCCTTGCAGCGTTTCGGCTTTGGTGGGATAGGATTgattagaaattattttttaaagacgcGTACCTTAATCAAGCCTGTTGTTGGGTTTAAGCGACACCGAGCCACACAGGCTGCCAGTCAGGTCCTTCTCAATGTACCTGAAACCAAAGTTACCGCACTTGAAAATGGACTCCGGGTGGCATCGGAGGACTCTGGGCTCTCAACGTGTACTGTTGGGCTTTGGATAGACGCAGGCAGCCGgtatgaaaatgaaaggaacAACGGAACAGCTCACTTTTTGGAACACATGGCTTTTAAGGGTACAAAGAAGCGCTCCCAGCTAGACCTCGAGCTGGAAATTGAAAACATGGGGGCTCATCTAAATGCATACACATCCAGAGAGCAAACTGTCTACTACGCCAAAGCATTTTCCAAGGATCTTCCCAGAGCTGTTGAAATCCTCGCCGACATCATCCAGAACAGCACCCTAGGAGAGTCCGAGATCGAAAGGGAGCGAGGGGTCATCCTCCGGGAGATGCAGGAAGTGGAGACCAACCTGCAGGAGGTGGTCTTTGACTATCTTCACGCCACGGCTTACCAAGACACCGCTCTAGGCCGGACCATCCTGGGGCCCACCGAGAACATCAAGACAATAAACCGCAATGACCTGGTGGAATACATCACTACTCACTATAAAGGTCCCAGGATCGTACTGGCAGCTGCTGGAGGAGTCTCCCACCATCAACTGATTGACCTGGCAAAGTACCACTTTGGTAATTTACTCTCCAGTTACAAAGGGGAGGCTCCAGCGTTGCCCCCATGCAGGTTCACAGGCAGTGAGATCCGCGTGCGAGACGACAAGATGCCCTTGGCCCACATTGCCATCGCTGTGGAGGCTGTAGGCTGGTCCCACCCTGACACCATCCCTCTCATGGTGGCTAACACGCTCATCGGAAACTGGGACCGTTCCTTCGGCGGGGGAGTGAATCTGTCCAGCAAGTTGGCGCAGATGGCGTGCCAGGGCAACCTGTGCCACAGCTTCCAGTCCTTCAACACCTGCTACACGGACACCGGCCTGTGGGGCCTCTACATGGTCTGCGAGCCGAACACCATCGAGGACATGATGCACTTCACTCAGAAAGAGTGGATGTCCCTGTGCACGAGTGTTTCCGAGAGCGAGGTCACACGAGCCAAGAACCTCCTGAAGACCAACATGTTGCTCCATCTGGACGGCTCGACCCCGATCTGCGAGGACATCGGCAGGCAGATGCTTTGCTACAGTCGTAGAATCCCCCTCCCTGAACTGGAGGCTAGAATTGATGCTATCGATGCCAAAACCATCAAGGATGTCTGTACGAAATACATCTATGACAAATGTCCTGCGATCGCTGCTGTT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K17732 PMPCB, MAS1; mitochondrial-processing peptidase subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138100 lncRNA upstream 200674 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 263068 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 563017 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 655630 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 752528 7143267 ~ 7143659 (+) True G110201
TU138195 lncRNA downstream 13859 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 188046 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 233104 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 273337 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 274250 8174241 ~ 8175182 (+) False G110444
AMCG00006532 mRNA upstream 19016 7873074 ~ 7877171 (+) True AMCG00006532
AMCG00006528 mRNA upstream 37396 7846969 ~ 7858791 (+) True AMCG00006528
AMCG00006530 mRNA upstream 66157 7818672 ~ 7830030 (+) True AMCG00006530
AMCG00006525 mRNA upstream 83792 7807554 ~ 7812395 (+) True AMCG00006525
AMCG00006521 mRNA upstream 113317 7760814 ~ 7782870 (+) True AMCG00006521
AMCG00006535 mRNA downstream 7703 7907694 ~ 7911362 (+) True AMCG00006535
AMCG00006531 mRNA downstream 36392 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006529 mRNA downstream 55035 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006533 mRNA downstream 68000 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006539 mRNA downstream 93940 7993931 ~ 8000522 (+) True AMCG00006539
TU138093 other upstream 240993 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 983933 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1307788 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1913278 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 275769 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 822459 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1666222 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5111193 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 13037506 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053249 False 1625 mRNA 0.51 13 NC_007115.7 1761029 ~ 1771308 (+)
grasscarp (Ctenopharyngodon idella) CI01000066_03711890_03717941.mRNA True 1768 mRNA 0.47 11 CI01000066 3711449 ~ 3717941 (-)