RNA id: AMCG00006535


Basic Information

Item Value
RNA id AMCG00006535
length 1302
RNA type mRNA
GC content 0.56
exon number 12
gene id AMCG00006535
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7907694 ~ 7911362 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCAGATTATTTGGGATCCGAGCAGCGCAAAGTcaaggaggaggaaaaggaggATAAAACCATAAGAGCTTTGGATGAAGGCGATATTGCTCTCTTGAAGACTTATGGCCAGAGCACATACTCGAGACAGATCAAGCAAGTGGAGGATGATATTCAACAACTGCTTAAGAAAATCAACGAGCTGACGGgcatCAAGGAGTCCGACACCGGCCTGGCACCCCCGGCGCTTTGGGATCTGGCAGCAGACAAGCAGACCCTGCAGAGTGAACAGCCTTTACAAGTGGCCAGATGCACCAAGATTATCAACGCCGACTCGGAGGATCCCAAGTACATCATCAATGTGAAGCAGTTTGCCAAGTTTGTGGTGGACCTGAGTGACCAGGTCGCCCCTACTGACATTGAGGAAGGAATGAGAGTGGGTGTTGACCGAAACAAGTACCAGATTCATATTCCACTTCCCCCAAAGATTGACCCCACTGTCACGATGATGCAGGTGGAGGAGAAGCCGGATGTGACCTACAGTGATGTGGGCGGCTGCAAGGAGCAGATCGAGAAGCTCAGGGAAGTCGTGGAGACTCCTCTGCTTCACCCCGAGAGGTTTGTTAACCTGGGTATTGAGCCTCCTAAGGGCGTCCTGCTCTTCGGCCCGCCTGGCACCGGGAAGACCCTGTGCGCCCGAGCCGTGGCCAACCGCACAGACGCCTGCTTCATCAGGGTCATCGGCTCGGAGCTCGTCCAGAAATACGTGGGGGAGGGTGCCAGGATGGTGCGCGAGCTGTTTGAGATGGCCAGGACAAAGAAAGCCTGCCTGATCTTCTTTGATGAGATTGATGCCATCGGAGGGGCCCGTTTCGACGACGGGGCTGGGGGGGACAACGAAGTGCAGAGGACCATGCTGGAGCTCATCAACCAGCTGGACGGCTTCGACCCCAGAGGGAACATCAAGGTGCTCATGGCTACCAACAGACCCGACACCCTGGACCCGGCTCTGATGCGGCCAGGGCGGCTGGACAGGAAGATCGAGTTCAGCCTGCCCGACCTGGAGGGTCGCACTCACATCTTTAAGATCCACGCCCGCTCCATGAGTGTCGAGAGGGACATCCGGTTCGAGCTGCTGGCGCGCCTCTGTCCCAACAGCACAGGGGCCGAGATCCGCAGCGTGTGCACAGAAGCCGGTATGTTTGCCATCCGGGCTCGGAGGAAAATCGCCACCGAAAAGGACTTCTTAGAAGCTGTGAACAAAGTGATCAAGTCGTACGCTAAATTCAGCGCCACCCCAAGATACATGACCTATAACTAA

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03061 PSMC2, RPT1; 26S proteasome regulatory subunit T1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138100 lncRNA upstream 212181 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 274575 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 574524 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 667137 7240086 ~ 7240557 (+) True G110240
TU137991 lncRNA upstream 764035 7143267 ~ 7143659 (+) True G110201
TU138195 lncRNA downstream 2488 7913850 ~ 7914828 (+) True G110361
TU138275 lncRNA downstream 176675 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 221733 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 261966 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 262879 8174241 ~ 8175182 (+) False G110444
AMCG00006534 mRNA upstream 7703 7896187 ~ 7899991 (+) True AMCG00006534
AMCG00006532 mRNA upstream 30523 7873074 ~ 7877171 (+) True AMCG00006532
AMCG00006528 mRNA upstream 48903 7846969 ~ 7858791 (+) True AMCG00006528
AMCG00006530 mRNA upstream 77664 7818672 ~ 7830030 (+) True AMCG00006530
AMCG00006525 mRNA upstream 95299 7807554 ~ 7812395 (+) True AMCG00006525
AMCG00006531 mRNA downstream 25021 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006529 mRNA downstream 43664 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006533 mRNA downstream 56629 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006539 mRNA downstream 82569 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006540 mRNA downstream 115328 8026690 ~ 8034832 (+) True AMCG00006540
TU138093 other upstream 252500 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 995440 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1319295 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 1924785 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 264398 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 811088 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1654851 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5099822 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 13026135 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053620 False 1456 mRNA 0.48 12 NC_007115.7 14926948 ~ 14932359 (+)
grasscarp (Ctenopharyngodon idella) CI01000020_03393384_03396967.mRNA True 1299 mRNA 0.48 12 CI01000020 3393384 ~ 3396967 (-)