RNA id: AMCG00006539


Basic Information

Item Value
RNA id AMCG00006539
length 3497
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00006539
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 7993931 ~ 8000522 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAGATGCGGAGACGGGTGACTGGGCagctgttattaaaaaaaaactttagcaCATCAAGATGATTGTTTGGACGGTGCAGAttaaacaacattaattaaaatatacgaaTTAAATTATAgctttcattaacattttaatgaatcagACACcgttttattatacattatgttaggtatttaaaaataattatatattttaaattatgtactGCTTATTTGTTGACTTTCGAAGCACAGATACCCTTTTAAAGCCCTTTTAATTGGCTGTACAAactttttgtgtaaaaaaacGAATTCACTTAATGGTAGAAATCGATatatctatttgtttttaatcgtCAATGTCGCTATtgatattaatgtgttttgcaTCGGGACGCTGTACTGTGACAAAGCGGGACCTTCTTCGCTTGGGTGCCGTTTCTCCAGCCGGGGACGACATAGAGTGCGGGACTGAAAATGGCGGCGCTCAATACCAGCGGGGATGGCGTTGATACCGCGGCGGAGAAATTAAAATCTCCTCAAGCAACTCTTCAGAGAGTCCGCGAAATACTCAGCCAGGGGATTGCGGTGGAAGACAGTCGGTGTGAGAGTGAGGAGCATGTGGCTGAACCAGAGACCCCAAATGATGTATCCCATGCTCCATTTCAGGCAGTGAGCAAAGAAGCCTTTTTCTCCCGGGTGGAGACGTGTGCGAGTTATGGCTGGACGAATGTAGCTTTTGACATGCTAAAGTGTACAAGCTGTGAGGCGTTCCTATGTGGATCTCTAGAGCTCAACCGagacattaataaatACAAAGAACGAATACTAGAGCTTAAGAAATCTTTACAAACACGCCATGACAAGTTTTGCTTCTGGCCAGACTTCCCCAGTCCAGATCGGTTCTGGACCCTCCCAATCAGCGAGCCAGCATCTCTAAGCGAGGATGTACTCAGTGTCCTGCTGCAGCTGATTGAAGACGAGCTGAAGAGAGAAGGAGGGTCTCCGGTGAAGATCTGTGCGGAGCCTCTGTCTGTGCAACTGACAGCCTGCATTGTGGCTCTGTTCGGCTGGTCCTCCAGTGCGACCCATAGCTCTCTGCACCTGCCCGTCCTCATCTGCTCCTACTGCCTGCGCAAGGTGGGCCTTTGGAACTTCCATCAGATCGACGGGCTGACCGTAGAGGGGGATGGCTCCTTTGCCTTGACCTCCACCCCGGGGCAGGACAGCCGTGGGGACCGGATGAACCCCACCTCCGCCTCGCCCTGCAGGATGGTGCTGCGGAGCCAGGACGCCACGCGGACACAGGGCTCTGAGCATGGTGATGCCAGCCCATCGCCGCTGGTTTTCCGGACTCGAAACCGGGACTCTCCCAGCCCCAATGAGGAGTCTCCCAGCCCCGTGTCCAGGGGAAAGAGGCCGGTGACGCGCAGCCGGGTGCTGGGCGAGGCCGTGCCGCCAGGCAGCGAGGTGCCCTCCAGCCCCCAGCGCAGGGCCAAGCGCTCGCGTCTCTCCTCCGCCAGCAGCACGgacacccccaccccccgcagTGCCTTTGACCCTTTGTACCAGCACCGAGACTGGTGTCCCTGGGTCAGCATGTCGCAGATTCAGACACCGGGGGAAGGGGAATCCACCACCGACACCCCTGCCCAGCCACAGGGCCCCGAGAGCAGCCAGCCGGGCTGGAAGGCAGCGCTCGACGTGTTCCTCTCCATGAGGAAATCGGACGAGTCCCAGGGGGCCACTTCATCACAGGGTCTCCATGACAAAACGCAGAGGGTCCTGAAACTCTTCCGAGTGTGTTTTCCCAACAAAGCCTCTCCGTGACACGGGACTCTGGTGACTGGCCTGGGTTTtacccctttttattttgccttttgtgGTCTTTCTACCTGGAGTTACAGACCTGCCATTGATACGAAGCCACGCCAGTTCTTGAGTCTTGTTTACCCTCAAATAATCAACTTCACCTttaactacaataaaaaaaaaaaaaaaaaacaacatccctGTGCCGTGCAGAGCGAGTGTCTTCCAGAGTCGCTCTGAAAAAGCCCGTTGACCTTCCTGTGATGGGGAAAGGGAGATGCAGGGCTCTGGACCTACACCGGGGGCTCCAGAACAAAGTTGGTTCATGCCCAAGAGACTGGCTGCTGACACCGATTGACTGCAGTAAGACAGCTGGCCTCATTCTGAGAGAGCCAGCCCTCCGTTACTCCTGGTGAGGACAGACTCGCTGTTAGGAGATATTATGGTCTGTACCACACTACTTGTGAGCAGCACTCCGTAACTGGGGAACACGTTCTTCTTTAtcccaaatgttaatgtttaactaCAGTAAATGCAGTTCAGTTACTTTGAAAGGGGATCATTGTATTTCTTCAAGGGAAATTAAAACGTTTAAAATATCATATGGGTCTTTCATTAGGGTTGGGGAGAACTGGACAACTATTTTAATGACTTAAAGATCTGTATGTGAACAGAATGTGTACAGTGCCATGGAAGGACTTTTTAGAAGGATTGTTTTGATGGTAAAAGTGGGGTGGGTGGGAAGACATTCctgatattgtacattttctgtgaatgcattgctttttttgCCTCTGGGTTTTAAGACTCAGCTGTAGCAGATGTTGAATTTTTGGATTCCATGTTCcgcacaaattaaaatgtttctcccTCGTAGTGGACACAAATGCCTTTGTATTGAAATATGAGAAATGAAAGCAGTGGTGCTGAGATTGCTGCCGTTTTCTTTTATTGCATTCTTGCCAGGAGGGACAGCCTGTGCAGACGTGATAAAATGtctcattaaatatttttctacatAAATATTGCAGTAATggaatgtatataaataatacattgttgaaTTAGGCCTGTTTGCTATGTTTGTTCCCATTATCTTGCATCCAttgctaaaaatatatttcagcatcATACCACAATCCTTCTGAAAGTGTCCTCAAGCCACTTTGAATCGGGcctttaaatgtttacatttaactTGTAATGAAGCTGCTAGCGacatttgtattaaaagcaGAAAGACCTTTCCTGTAAATGCACTATTGTCATTTATGTGTATAACACCTGAGACCTTCATACACTTATAATAGCTCTGCAATTCCATTATATTATTGCTTTcctaattcatttatttttccacccaAAGTGAAGCTTTAAACCACAGCTTGCTCTGAATGaattacacatatatacaaatattaatttatctttaaacATTTTGCGTTGGACATCAGAGATTTTGAAAATCATCCTGCTTTAACTCCCAGTTTATCTGGTAAGCCTACAGTGGCAGCAGTAACCGAGCCCAGGAATGCCCTTTCACCTAGTTCCTCAGAGGGTAAAcaatggggcttggaaaagcTGGTTACACGACGTTAAAAAAATAGTGTTCATTCTAGAGTCAGAGCTGCAAAGACATTCTAAAAGGCAAAATTTAAACCTGTCAATCTGCTTGAAGCCACTGGTGTCTTGTGTTTGCAA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138195 lncRNA upstream 79103 7913850 ~ 7914828 (+) True G110361
TU138100 lncRNA upstream 298418 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 360812 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 660761 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 753374 7240086 ~ 7240557 (+) True G110240
TU138275 lncRNA downstream 87515 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 132573 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 172806 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 173719 8174241 ~ 8175182 (+) False G110444
TU138303 lncRNA downstream 173719 8174241 ~ 8175573 (+) False G110444
AMCG00006533 mRNA upstream 12837 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006529 mRNA upstream 27397 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006531 mRNA upstream 42951 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006535 mRNA upstream 82569 7907694 ~ 7911362 (+) True AMCG00006535
AMCG00006534 mRNA upstream 93940 7896187 ~ 7899991 (+) True AMCG00006534
AMCG00006540 mRNA downstream 26168 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006546 mRNA downstream 222359 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006551 mRNA downstream 643720 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006552 mRNA downstream 710228 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006558 mRNA downstream 727121 8727643 ~ 8728326 (+) True AMCG00006558
TU138093 other upstream 338737 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1081677 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1405532 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 2011022 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 175238 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 721928 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1565691 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 5010662 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12936975 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile