RNA id: AMCG00006540


Basic Information

Item Value
RNA id AMCG00006540
length 453
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00006540
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8026690 ~ 8034832 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGATTATGCCCAGATTCTGCTCGAACACACCGTACGAGGGGGGAGTGTGGAAGGTGCGAGTAGATCTACCCGACAAATACCCTTTTAAATCTCCATCTATAGgattcatgaataaaatatttcatcCCAACATCGATGAAGCGTCAGGAACTGTGTGTCTAGATGTAATTAACCAAACATGGACAGCCCTCTACGACCTTACCAACATATTTGAATCGTTCCTGCCTCAGCTGCTCGCCTATCCCAACCCCATCGACCCCCTGAACGGCGACGCCGCCGCCATGCCCTGCCTTGACTCCCTGGCCTGGGAGTTGTGCCTCCGAGAATACATCCAGAAATATGCAACAGAGGAGGCTTtgaaggagcaggaggagggTGCGGGGGACAGTTCGTCGGAGAGCTCAATGTCGGATTTTTCGGAAGACGAGGCACAGGATATGGAATTGTAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138195 lncRNA upstream 111862 7913850 ~ 7914828 (+) True G110361
TU138100 lncRNA upstream 331177 7694554 ~ 7695513 (+) True G110286
TU138041 lncRNA upstream 393571 7593287 ~ 7633119 (+) True G110243
TU138043 lncRNA upstream 693520 7327030 ~ 7333170 (+) True G110245
TU138035 lncRNA upstream 786133 7240086 ~ 7240557 (+) True G110240
TU138275 lncRNA downstream 53205 8088037 ~ 8090127 (+) True G110429
TU138293 lncRNA downstream 98263 8133095 ~ 8135492 (+) True G110439
TU138302 lncRNA downstream 138496 8173328 ~ 8175573 (+) True G110444
TU138300 lncRNA downstream 139409 8174241 ~ 8175182 (+) False G110444
TU138303 lncRNA downstream 139409 8174241 ~ 8175573 (+) False G110444
AMCG00006539 mRNA upstream 26168 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006533 mRNA upstream 45596 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006529 mRNA upstream 60156 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006531 mRNA upstream 75710 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006535 mRNA upstream 115328 7907694 ~ 7911362 (+) True AMCG00006535
AMCG00006546 mRNA downstream 188049 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006551 mRNA downstream 609410 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006552 mRNA downstream 675918 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006558 mRNA downstream 692811 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006556 mRNA downstream 711762 8746594 ~ 8794059 (+) True AMCG00006556
TU138093 other upstream 371496 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1114436 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1438291 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 2043781 5979062 ~ 5982909 (+) True G110023
TU138304 other downstream 140928 8175760 ~ 8176786 (+) True G110445
TU138383 other downstream 687618 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1531381 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4976352 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12902665 20937497 ~ 20938170 (+) False AMCG00006811

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053628 True 2758 mRNA 0.41 7 NC_007115.7 15011341 ~ 15059876 (+)
grasscarp (Ctenopharyngodon idella) TU128034 True 816 lncRNA 0.44 1 CI01000020 3303805 ~ 3304620 (+)
mexican tetra (Astyanax mexicanus) TU128034 True 1562 lncRNA 0.38 5 NC_035906.1 32669402 ~ 32690721 (+)