RNA id: AMCG00006545


Basic Information

Item Value
RNA id AMCG00006545
length 1437
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00006545
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8128879 ~ 8137211 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTCAAGACCCCTGAGTTCTCGTACGCGCAGGTGAAGGAGAACAAGTCTGAAGTGTTCAAAGGGTCTGGCCTTCTCTGTCCGACCGCCTCTTACACAGACAGCTCCGACGATGAGACGTCCCCCCGAGACAAGCAGCAGAAGAACTCCAAGGGCAGCAGCGACTTCTGCATCAAGAACATCAAGCAGGCCGACTTCGGGCGCAGGGAGATCGAGATCGCAGAGCAAGAGATGCCTGCTCTCATGGCCCTGAGGAAGAGAGCGCAGGGAGAGAAGCCCCTGGCCGGAGCCAAGATTGTGGGCTGCACTCACATCACAGCCCAGACCGCGGTACTGATGGAGACGCTGTCTGCCCTGGGTGCTCAGTGCCGGTGGGCTGCCTGTAACATCTACTCCACCCAGAACGAAGTGGCCGCCGCCCTGGCTGAGGGAGGGTTCGCAGTGTTTGCCTGGAAAGGGGAATCGGAAGATGATTTCTGGTGGTGTATCGACCGCTGTGTCAATGTGGAAGGGTGGCAGCCTAACATGATCCTGGATGACGGAGGAGATCTCACTCACTGGATCTACAAGAAGTACCCCAACATGTTCAAGAAGATCAAGGGAATCGTGGAGGAGAGCGTCACTGGAGTTCACAGGTTGTACCAGTTATCCAAAGCTGGGAAGCTGTGTGTCCCAGCCATGAATGTGAACGACTCGGTCACCAAACAGAAGTTCGACAATCTGTACTGCTGCCGGGAGTCCATTCTGGACGGtctGAAAAGGACAACAGATGTGATGTTTGGGGGAAAGCAGGTGGTGGTGTGTGGATACGGAGAGgtgggaaaaggctgctgtgctgctctgAAGGCCATGGGCTCCATAGTGTATGTCACAGAGATCGACCCCATCTGTGCCCTACAGGCCTGTATGGATGGTTTCAGACTGGTGAAACTGAATGAAGTGATCAGACAAGTGGACATCGTTATTACCTGCACAGGTAACAAAAACGTTGTGGTGAGGGAGTACTTGGACCGCATGAAGAATGGCTGCATTGTCTGCAACATGGGCCACTCCAACACTGAGATTGATGTGGCCAGCCTGCGCACCCCCGAGCTGACCTGGGAGCGGGTAAGGTCACAGGTGGACCACGTCATCTGGCCCGACGGCAAGAGGATAGTCCTGCTAGCCGAGGGTCGTCTCCTCAACCTGAGCTGCTCCACGGTCCCCACCTTTGTGCTGTCGATAACCGCCACCACCCAGGTAGGAAACTCCACCCGGGCTGTGGCCTTGGGGGAGGGTATCGCGTTGGCTCGCGCCTCGGCGCTCAGCCCTTTTCTCAAGATGCTCCTCTCTGTCTCGCAGGCGCTGGCTTTGATAGAGCTGTACAACGCCCCCGAGGGCCGCTACAAACAGGACGTGTACCTGCTGCCCAAGAAGATGGgtattaaCCTACTGTAA

Function

GO: NA

KEGG:

id description
K01251 E3.3.1.1, ahcY; adenosylhomocysteinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138203 lncRNA downstream 219651 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 372027 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 560720 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 561312 7567204 ~ 7567567 (-) True G110270
TU138067 lncRNA downstream 570411 7558205 ~ 7558468 (-) True G110269
TU138400 lncRNA upstream 646694 8783905 ~ 8794062 (-) False G110520
TU138472 lncRNA upstream 872929 9010140 ~ 9014326 (-) True G110576
TU138492 lncRNA upstream 1339271 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 1408284 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 2167720 10304931 ~ 10305247 (-) True G110720
AMCG00006543 mRNA downstream 8302 8090684 ~ 8120577 (-) True AMCG00006543
AMCG00006544 mRNA downstream 38728 8088037 ~ 8090151 (-) True AMCG00006544
AMCG00006541 mRNA downstream 41260 8065076 ~ 8087619 (-) True AMCG00006541
AMCG00006542 mRNA downstream 134968 7982084 ~ 7993911 (-) True AMCG00006542
AMCG00006538 mRNA downstream 203244 7913423 ~ 7925635 (-) True AMCG00006538
AMCG00006548 mRNA upstream 31791 8169002 ~ 8169391 (-) True AMCG00006548
AMCG00006547 mRNA upstream 37030 8174241 ~ 8183554 (-) True AMCG00006547
AMCG00006549 mRNA upstream 282177 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006550 mRNA upstream 340132 8477343 ~ 8512622 (-) True AMCG00006550
AMCG00006553 mRNA upstream 714532 8851743 ~ 8856674 (-) True AMCG00006553
TU137983 other downstream 1039894 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 1343028 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 2111936 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 3963279 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 5798888 2324131 ~ 2329991 (-) True AMCG00006328
TU138386 other upstream 585177 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 650607 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 860426 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 1408284 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 1950067 10087278 ~ 10107285 (-) True AMCG00006579

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00055243 False 2671 mRNA 0.49 17 NC_007115.7 5025625 ~ 5092335 (-)