RNA id: AMCG00006546


Basic Information

Item Value
RNA id AMCG00006546
length 1849
RNA type mRNA
GC content 0.51
exon number 8
gene id AMCG00006546
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8222881 ~ 8244037 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCTGATGTTCGCCTATTGTGTGGGAGGAAAACAGAACTCTGCCCCAGAGAAAGTCCAAAGTCACTTGGAAAACTCCACAAAGTACCACATCCAGCAGGCTCAGAGACAGCAAGTGAAGCAGTACCTCACGCTCGGCACCAAACTGACAAACCAGGGACGCATCTGCCACCCACATCCCGGACAGCCCCTGGGCTCCGTGCCGGTGATGAGGAATGGTCACCTGCCTGCGGTGAACGACAACAACACGCCGGACAGCCCAGTCTCTCTGCTCACTCTCGCCAGCAACCACGACAATGAGtttccAATGGATGAAGTTATTGATGACTTAATCAGCCTTGAATCCAGTTTCAATGATGAGGGCTTGGGATGCATGGAGCCTAACATCATAATGCAGAACAATGTGCCACTGAACAGCAGTATTTTGGATGTGTACGGCGGTGAGCAAGAACATGACACACGTGCTCTAGCCAAAGAACGACAGAAAAAAGACAACCACAATTTAATTGAAAGAAGACGGAGATACAACATTAACTACAGAATCAAGGAACTCGGTACGCTGATTCCGAAGTCAAATGACCCTGATATGCGCTGGAACAAAGGCACAATTTTAAAGGCATCGGTGGAGTACATTAAATGGCTGCAGAAGGAGCAGCAGCACGCGCGAGAGCTGGAGAGCAGGCAGAAGAAGCTGGAACAAGCCAACCGGAGGCTCCTGCTCCGAATCCAGGAGCTGGAGATTCAGGCTCGTGCCCACGGCCTCCCTGCCATGGCGACCTCCCTGGGAGCCATGGAGCTGTCTTCCCACCTcatgaagcagcagcagcaccagcagcagcagcagcagcagcaccagcagcagcagctgtacCCGGAGGAGATCAACGGCGAGTACGTCCCGACCAGTGCCGTGCCCCAGCTGTCGGACATGGACCACGGTGACGGCTCGTCCACCTTCTCCGACCCGCTGTCTCACTTCACGGACTTCTCCTTCAGTGCCACGCTCAAAGAGGAGCACCGGCTGGACGAGATCCTGATGGACGACCCCCTGTCTCCGTTCGGGACCGACCCCCTCCTGTCGGCCACGTCGCCCGGCGCGTCCAAAGGGAGCAGCCGGCGGAGCAGCTTCAGCTCTGACGACGGAGAAGACTTGTGATGGTGGCGACACGCCCTGCCTCTGTTTACATTCCTCCGAAAAAACCAAGTGCCAGTCCCCTCCTTCGCCCCGCCTGGAACCGCCAGGGTCCCCTCTGTGGTCCTCCTAAGCACTTCCTGTCTTGGTTCAATGGACCAAGCGTGTGCTCCACCGACAGGAGGCCACTTTCCACGTCAGTGCTTTGAAGGGCACCACAGGTTCCAGTGAAGAGACCAGTACAGTAAAGGGAGACATTGCTGGGATTCCACATTTTAGCACTCTGGTGCTAGCAGATTGTTAGCACACTAAATTCcacatgtaaatacagtatgtatagCAAAGAAGACGAGCGACAGTAATTAATACCTAATGCTTAAGAATGAAAAAGCCATCGTCGAAATGGCAGAGGACAACAAAGAACTGACCTCATCAGCTTGACCTCTGTTGTGCCTTAACTTAAGACAATACGTTTGCTCCTGAGACTTTAGACAATATGAATCCTCAGATAACAATGCTAATAGCCAGAAACTCTATGAGGCCTTTGAAattgtgtgttgtctgtctttttttattaacttttcaagtacttttgtgtatgtatttataaatgtttaatccaactattttaaactgcagtttattACAATATCTAACCTGTAACAACTTTTTATGTGGGGGTTGACGGGGAGAGACACAAtaaatctcttttttttaaa

Function

GO: NA

KEGG:

id description
K15591 TFEC; transcription factor EC

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138306 lncRNA upstream 43193 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 44153 8178521 ~ 8178728 (+) True G110446
TU138302 lncRNA upstream 47308 8173328 ~ 8175573 (+) True G110444
TU138303 lncRNA upstream 47308 8174241 ~ 8175573 (+) False G110444
TU138300 lncRNA upstream 47699 8174241 ~ 8175182 (+) False G110444
TU138404 lncRNA downstream 551023 8795060 ~ 8795331 (+) True G110523
TU138446 lncRNA downstream 643649 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 1212628 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1786389 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 2125678 10369715 ~ 10369931 (+) True G110722
AMCG00006540 mRNA upstream 188049 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006539 mRNA upstream 222359 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006533 mRNA upstream 241787 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006529 mRNA upstream 256347 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006531 mRNA upstream 271901 7936383 ~ 7950980 (+) True AMCG00006531
AMCG00006551 mRNA downstream 400205 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006552 mRNA downstream 466713 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006558 mRNA downstream 483606 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006556 mRNA downstream 502557 8746594 ~ 8794059 (+) True AMCG00006556
AMCG00006555 mRNA downstream 555705 8799742 ~ 8807859 (+) True AMCG00006555
TU138304 other upstream 46095 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 567687 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1310627 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 1634482 6519865 ~ 6588399 (+) True AMCG00006501
TU137762 other upstream 2239972 5979062 ~ 5982909 (+) True G110023
TU138383 other downstream 478413 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 1322176 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4767147 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12693460 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12804299 21048336 ~ 21049038 (+) True G112567

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053363 True 1410 mRNA 0.53 8 NC_007115.7 6032640 ~ 6047236 (+)
grasscarp (Ctenopharyngodon idella) CI01000335_00149953_00163006.mRNA True 1922 mRNA 0.49 9 CI01000335 149953 ~ 163539 (+)