RNA id: AMCG00006547


Basic Information

Item Value
RNA id AMCG00006547
length 2658
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00006547
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8174241 ~ 8183554 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAGATGTGTTTCCGGTGACATGCGCCTCACAGGCCGGGCAGGGAAGTGACGGCCAAGAGCGGGATAAGATGACGCCGGTGAAAGAGGGCCTGGTGCCCGCCCTCATCGACAGGACCATGAGGATGAGGAAGGAGGAGCAGGCGAGGAAGGTGGTGCTGGCCTGGGGCGTCCTCAACGTGTCTCTGGCTGGCATGATCTACACTGAAATGACAGGAAAATTGCTGAGTAAATATTATAACATCTCCTACTGGCCTCTCTGGTATATAGAGCTGGCACTGGCCTTCCTGTTCAGTCTCAACGCCCTATTTGACTTCTGGAGGTACTTCAAGTACACAGTGGCTCCCTCCAGCATCGTGGTCACTCCTGAGCAGCACCGGCTCCTGGGGCTGAGAAGCTCGGGTATCCAGGCCTCTCCTCCTCAGAAGCCAGAGAAGAAGGAGACCCCAGCCCCCGCCATGTCCTCCCCGATGCAGGGCCAGAGTGTGCTGAGTTACAGCCCCTCGCGGCCCCCCAGCACCAGCCCCAAGTTCTCCCCCAGCTGCATGACAGGGTACAGCCCTCCCCTGCAGAGTCCTTCACCACCCAGCTCCGGAAGCCCCTTCTCCTCTCCTGTGGCCTACTCTTCCACCAACAGCTTGAATAAGGTAATGAGCTACAGCCCCTCTTCCTCCAGCACCTCCCCGTACCCCAGCAGCATCGGCGCAGTCGAGAGCTCTAGCCTGAGGGCTCGCTACCGGACCTCCCCCTCCGTGTTCAACTCTCCAGGGGGCAAGGAGGATTACATGGCGGACCTCAAGTCCCTGGAGACATTCCTCCGCTCAGAGGACGAGAAGAGGCATCGCAGCCAGCTAGGGAGTCCCGAGTCAGTCTCTCCTTCAAACAGTCCCACCTTCTGGAACTACAATCGCTCGGTGGGAGACTACGCCCAGAGTCTCAGGAAGTTCCAGTACCAGCTGGCCTGCCGGTCCCAGGCTCCCTCGGCACACAAGGATGAGACGGACCTCGGCTCTAAACAGGCAGCTGAAGAGGTCTGGGCCAGGATCACCACCAACCGGCACCTGGTGGATCGGATCGACACGTGGACGGCCAAGCTGAGAAATTGGATCAATGACACCATCCTGGTTCCCCTGGTGAAGGAGATCGACTCCGTGAACACCCTGCTCAGGAGGATGGGCTGCCCGGAGCTGCAGACGGGGGAAGCCAGTATCAGCAGCCTGAAGCAAGCAGCTCTAGTGAAGGCCTCCTTAATTCCCACCCTGAACGCCATTGTTCAGTACCTGGACATCACCCCCAACCAAGAGTACCTGGTGGAGCGGATCAAAGAGCTGGCGCACGGGGGCTGCATGAGCTCCTTCCGGTGGAACAGCGGCGGCGACATCAAGGCCAGGAAGTGGGACACCGACCTGCCCACGGACTCGGCGATCATCATGCATGTTTTCTGCACATACCTGGACTCCCGGCTCCCTCCGCATCCCAAATACCCGGATGGGAAGACATTCACCTCCCAGCACTTCATCCAGACGCCGGACAAGCCAGACATGACCAATGAGAACCTGTTCTGTATCCATCAGAGCAGCACTAACCCCCCCCACTACCAGCTCATCTACCAGGGCCACATCTACAATCTGCCAAAGGGCCGAAACAACATGTTCCACACGGTGCTGATGTTCCTGTTTGTCATTAAGGCCAAGGAATCGGGAATGCTAGGACGAGTGAATCTTGGCTTATCGGGTGTGAACATCCTGTGGATATTTGGAGACTAATGAACTCCGAATGCCTTGAATTTCTGATGCTTGTGAACAGTTCCAGTAAATCAAGGAAACTTCACATTTGAAGTACAAAGGCAACAAATCTATTCTACCAAAATATAACTCCACCCATGGGAGTTTGGTTGACGTTGTTcacgtttttattttagaaagtaATCTAAGAGACCAGCAGTACAATAACTGTTACATTACAGCCTCTTTACCTCCGTAGGAAACTGCTGCTCAAGTCTTTTTTGAAAGAGCCGCAAGCAGTAACTTGTTGGCTAATGTAAGTGGTCTTCCTGACCCTTTACCAgcaaaatctgattaaatgaaaacttgaaTCTGTTTAGTTGTATTCCTGAATGTTTTGTATGTGGTTAAGAGCCTcggctgtattttttttaatcggtgctctttctgcatttttccatttttcaaaCACTCATATGAGGccattgtaaaataattcatGTAAACCGAAAGAAATGTTagaccttttttaaaaaacaatgtatattaaatctGTATATATGAACTCAATGCAGGATGCttacatgtttttgtataaaCTATACTTTTACTGTCACCACCTATTCAAATCTGTTGTAAATATGAGGATTTTAATAAACCACGGTTCAGTTAGATTTATATTTCTCAGTTCACACTACCGTTTCTAAATTATTCTTAATATTTaaggatgtttgtttttaaaaagttgcACAGTGTTTGCAGCCTTAACACGTCAAAGTCAGAGTTCATTATGTTCAGCttactgctgctgttttcagaCTTCATTACCTGTCTTAATAATTTGAGTGTCTTTGATTTAGAAAAAGACGTTTCTTTGACCTGCCGCTGAATTCGTGTGGCAGAATGAGAATAAAGATTTTGCCATTTCTAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138203 lncRNA downstream 265013 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 417389 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 606082 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 606674 7567204 ~ 7567567 (-) True G110270
TU138067 lncRNA downstream 615773 7558205 ~ 7558468 (-) True G110269
TU138400 lncRNA upstream 600351 8783905 ~ 8794062 (-) False G110520
TU138472 lncRNA upstream 826586 9010140 ~ 9014326 (-) True G110576
TU138492 lncRNA upstream 1292928 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 1361941 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 2121377 10304931 ~ 10305247 (-) True G110720
AMCG00006548 mRNA downstream 4850 8169002 ~ 8169391 (-) True AMCG00006548
AMCG00006545 mRNA downstream 37030 8128879 ~ 8137211 (-) True AMCG00006545
AMCG00006543 mRNA downstream 53664 8090684 ~ 8120577 (-) True AMCG00006543
AMCG00006544 mRNA downstream 84090 8088037 ~ 8090151 (-) True AMCG00006544
AMCG00006541 mRNA downstream 86622 8065076 ~ 8087619 (-) True AMCG00006541
AMCG00006549 mRNA upstream 235834 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006550 mRNA upstream 293789 8477343 ~ 8512622 (-) True AMCG00006550
AMCG00006553 mRNA upstream 668189 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006554 mRNA upstream 674791 8858345 ~ 8869522 (-) True AMCG00006554
AMCG00006559 mRNA upstream 704137 8887691 ~ 8912003 (-) True AMCG00006559
TU137983 other downstream 1085256 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 1388390 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 2157298 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 4008641 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 5844250 2324131 ~ 2329991 (-) True AMCG00006328
TU138386 other upstream 538834 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 604264 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 814083 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 1361941 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 1903724 10087278 ~ 10107285 (-) True AMCG00006579

Expression Profile