RNA id: AMCG00006548


Basic Information

Item Value
RNA id AMCG00006548
length 390
RNA type mRNA
GC content 0.65
exon number 1
gene id AMCG00006548
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8169002 ~ 8169391 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGTCCAGGTTGTGGCAGTGAAAATGGCCGAGGTCGAGCTGAAAGACATCCCCAGCAAAGATCTGCCCCCCGTGTCCCCAGTGCCACCCAAGGCGGAGGAGAAGCCGGCCGTGAAAAACGAGGCTAATGCCGCCGCCGCTCCCGGCAGTGCGGACCCCAGCCCCCCAACCCCGAGCCCGAACCCCGTGAAGATGCCGCAGGCGTCGGCGCTGAAGCGGACCGACCCGCAGCAGAACGGCGGGGAAGCCTTCGTGAACCGCGACGGGACGGTGGCCGAAGCCCCGAGGACCGTGAAAAAGGTGAGGGGGAGCTGCAAGTGTGCATCTGCGCCTCACGGCAGCCTGTCATTGATTGGGGTTATGATGCGAAATCGGCATTGTGCGTGA

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138203 lncRNA downstream 259774 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 412150 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 600843 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 601435 7567204 ~ 7567567 (-) True G110270
TU138067 lncRNA downstream 610534 7558205 ~ 7558468 (-) True G110269
TU138400 lncRNA upstream 614514 8783905 ~ 8794062 (-) False G110520
TU138472 lncRNA upstream 840749 9010140 ~ 9014326 (-) True G110576
TU138492 lncRNA upstream 1307091 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 1376104 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 2135540 10304931 ~ 10305247 (-) True G110720
AMCG00006545 mRNA downstream 31791 8128879 ~ 8137211 (-) True AMCG00006545
AMCG00006543 mRNA downstream 48425 8090684 ~ 8120577 (-) True AMCG00006543
AMCG00006544 mRNA downstream 78851 8088037 ~ 8090151 (-) True AMCG00006544
AMCG00006541 mRNA downstream 81383 8065076 ~ 8087619 (-) True AMCG00006541
AMCG00006542 mRNA downstream 175091 7982084 ~ 7993911 (-) True AMCG00006542
AMCG00006547 mRNA upstream 4850 8174241 ~ 8183554 (-) True AMCG00006547
AMCG00006549 mRNA upstream 249997 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006550 mRNA upstream 307952 8477343 ~ 8512622 (-) True AMCG00006550
AMCG00006553 mRNA upstream 682352 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006554 mRNA upstream 688954 8858345 ~ 8869522 (-) True AMCG00006554
TU137983 other downstream 1080017 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 1383151 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 2152059 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 4003402 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 5839011 2324131 ~ 2329991 (-) True AMCG00006328
TU138386 other upstream 552997 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 618427 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 828246 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 1376104 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 1917887 10087278 ~ 10107285 (-) True AMCG00006579

Expression Profile