RNA id: AMCG00006550


Basic Information

Item Value
RNA id AMCG00006550
length 5233
RNA type mRNA
GC content 0.41
exon number 14
gene id AMCG00006550
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8477343 ~ 8512622 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTCTCCCTAAGCAGGTGCCTGTGTCAGTGGCCATGATGACTCCCCAGGTGATCACCCCCCAGCAAATGCAGCAGATCCTCCAGCAGCAAGTCCTCTCCCCTCAGCAGCTCCAGGCtctcctccagcagcagcaagcaGTCATGTTACAGCAGCAACATCTCCAGGAGTTCTACAAGAAACAACAGGAACAGTTACACCTCCAGCTTCTACAACAGCAGCACCCAGGCAAGCAGCAGAAAGAGcaacagcagcagcagcagcagcagcagcagttagCAGCCCAGCAGCTTGTcttccagcagcagctcctccagaTGCaacagctccagcagcagcagcacctgcTCAACCTGCAGCGCCAAGGCCTCATCTCCATGCCTCCCGGACAGGCGGCCCTCCCTGTCCAGTCCCTGCCCCAAGCTGGCCTGAGCCCTGCAGAAATCCAGCAATTATGGAAAGAAGTGACTGGGGCTCACAATATGGAAGACAATGGCATTAAACACGGAGGGCTTGACCTCACGACTAACAATTCTTCCTCTACTACCTCCTCTACCACTTCCAAAGCATCGCCACCGATTACTCATCATTCCATGGTGAATGGCCAGTCCTCAATCCTCAATGCgaggagagagagCTCGTTACACGAGGAGACTGGGGCCTCTCATTCCCTCTACGGCCATGGGGTGTGCAAATGGCCCGGGTGCGAGAGCATTTGCGACGATTTCGGCCAGTTTTTGAAGCACCTTAACAGCGAGCACGCGTTGGATGACAGAAGCACCGCGCAGTGTCGTGTTCAGATGCAAGTCGTACAACAGTTAGAGATACAGCTTTCTAAAGAACGTGAACGCCTTCAGGCGATGATGACCCACTTGCACATGCGACCCTCAGAGCCCAAGCAGTCTCCAAAACCCCTCAACTTGGTGTCGAGTGTCACTATGTCAAAGAACATGTCGGAGACGTCCCCTCCAAACTTACCTCAAACGCCCACTACGCCAACGGCCCCCGTCACCCCTCTGTCCCAGGGGCCCTCGGTCATCACCCCCGCCAGCGTGCCCAACGTCGGAGCCATCCGGAGACGGCATTCGGACAAGTACACCATTCCCATGTCGTCAGagaTTGCCCCAAACTATGAGTTTTATAAGAATGCAGATGTCAGACCTCCATTTACTTATGCAACTCTCATAAGGCAGGCTATCATGGAAGCAGCTGACAGGCAGTTAACACTCAACGAGATTTACAGCTGGTTCACACGGACATTCGCCTACTTCAGGCGTAATGCAGCAACTTGGAAGaatGCAGTCCGCCATAATCTCAGCCTGCACAAGTGTTTTGTTCGAGTAGAAAATGTGAAAGGGGCAGTGTGGACAGTGGATGAAGTCGAATACCAAAAGCGCAGGTCACAGAAGATAACGGGAAGCCCAACGTTAGTTAAAAACCTGCCGACTAGCCTGGGTTATGGAGCAGCGCTTAATGCGAGCTTACAGgcCGCGTTAGCAGAGAGTAGTTTACCCTTGCTTGGAAACCCCGGTCTGATCAATACCAGCTCCAGTGGATTATTGCAAGCAGCTCATGAAGACCTCAATGGTTCACTAGACCACCTTGACAGCAATGGGAACAGCAGTCCAGGGTATTCGCCACAGACTCACATGCAAGCGATTCACGTCAAGGAAGAACCGTTAAACACAGAAGACGAAGAGTGTCCGATGTCGTTAGTGacaacagccaatcacagtcCGGAGCTAGAAGACGACAGAGAAATCGAGGAGGAGAATCTATCCGAGGACTTGGAGTAACTGGACTTAAGGAACTGCAGCCACAGGGTCGCTTCATGGACCTCCATAACCACTCCACTACCAAGAATATATGGCAGACTTTACTGTGACTATTTATTGAGCATGCATCAAGGAGACAGCCTAAAGGAACTATTTGTTACAGCCCTTTGGGAACCAGAAATGACGAGCATCAAATGCTTGGTTTTTAACCTATAAaagactgatttccttataaaCTCAAATGGCTTGgccatataaaaaaaaaaagaaaataaaaattggctATCATGGGTTCATGGATTGAACGAAAAACGAGGAAGTCTGTTCTGTAGAAAGCTAATGGCCTCATATACTGccaaaaaaatagttttagtttCATTCAGTGTGAATTTCCAACCTGCAGTAGTTGTTAATACTAGAAACAATTGCTGATCCAGTTCaagttgttgctgttttatcaTTTGCACAGGAGTAGTATCAGAAATTAGTGTCACTGCCTGTATGTAGCTGAAATTTTAAGATGGaccagtatttttttatttttttattttatttcattttaattttggcgCCACCAACTGTAAATGACATTAGTTTCCAATAACAGAACCAGTTATCAGACTGTTGCAAGTTTGAACTgtccaaaaaatgaaaaaaaatgaaaaaaaaagtaggctTCCAGTCTTTGTTTGTGCTGAAATGTGAAGTGTGATCTTAAgttgaaaatgtaactgtttgTGCAAGCACCatacttcaaaaaaaaaaagaaaaagaaaaaaaaaacttgtaaaaaaagaaaaaaatgcgtTTCTGCATATTCTACAACTGTTCTCTTTACCTCCTCGTTCTGAAGCTTTGTCTACCTGCAAACAGTCAAAGGCAACAGCTAGAAACCAAAGCCAACTCTAACGATGGCCAATAGCTCAGACAGAAGCAGCCACACGCTTTGGTCAGCCTTCTGTAATTAGTACAAAGGAAGCTTTCCAAGAACTACCTTCTGATAACCTCTGGGATTGTTTCATTTAGCCCtgtacaaagaaaatacaatgattttgatgtgtaatttgattaaatagtGGAGAGTCCACCTGAAATGCAACAGAGTTCTCTCTGCATTTACAGCGCGTGGAGAAATGATGTAAATCGAAACGTAGCTGGTGGAAACCGGTAGGGAGCAGCTTCGTGTGGATCACAAAAACCACTGACCAAAAcgacatttgtgtatttaatggAAGTGCAGAATTTGTACTGTTGTATAATTCCagtttggtttaattttcatttcccatgattgtcattgtttttgtagtgAATATGTAATGTTAGTGGGACTGTCTtgtatgttttgtcttttccttttttgtacaAGTTGTTCAGAACCGTcttaaatgaaactgaaaacatagTAACCAAACATTAAAAGATCTAGTGAAgccaaaaacataataataatttcaagttGATATGAAATGATCTGGCTTGGTTTTCAAGTAAAAGCAAAGAGTATAGCCATTGTAGTGTAGGATGTCTGAGGTGAAATAGCCTTTTCTAGGTgatattttgcttaattttaagTTTGTAATACAGTGAATTGTTTGTTAAATATTCATCCATATCTAGCTCTTGGTGGATAGATATGGGTAAATAAGTAATCTGTTAGGGGCATCACATTTCCAGTTAATTCAGACTCTTTTTACAGCATTTGTGATTTTGCAATACTTTGgactaaaatgtgtgttttggtaACAAgtaatatttgttaatatttatttgaaactttttttaagCTAATGTCATCTAGAAAAGCAGATGTGGTTGCTTTAACGgtcatttctgttttcagtcaAACCAAAGTTACACAAAATTCTGCCTCTTCTTATACGGGATAGTAAAGCTAACAATACACTCCCTTTTAAAGACTTGCACACGGTCCAAATTGTTGGTATGCTGGCTTTCTTGGTCCTTGTTTTGCTAAAACTACCAATGCATAAAAATTTTTctaataatttgtaataatgcatttgcattgtatttaaaatacaaatgtatgtctACTTTGTGCttataaaaacatactgtatatatatgttgctTTTCAAGTGCTGTGCCAAGTCTTTGTAAtcctttacttttttcccccaaccaAGGGACCTCATAACCTGATTATGGTTATTGCTTTACAAACAGTTTTTGACAGAAGGTGGCTGCTAGAgcttaacacacacaccagttCCATGGGAAGGGGCTGGTTCCTGCAACTAAGCTCATCATTTATTCTTTGCTGGAGTCAGCAAATAGACTTAAAGACATACAGAATCATCTATCACGCCAAATATAAGGACACAATGTCTTTCAAAAGGGTTCTCCCACTCACCCAAAAGGCTTTCTAAAAGGTTCTACCTCTGCACAACAAATCCAGAACAATTACGACAGATTGCACGAGTTGTAAGAATGCCACAATAgctgttacattttattatgctCGTCTTACGGACACGGTCAACAGAAGGTTTACATTCCCAATGTCAGAAACGGAAGATTTGCATTGTAATAGGTTGTCTTCAAACATTTGTAGAATGATAATTTAAAGATTACCTGCAAGGGAATATtgtgttttcaaatgcatgtcTAAAATACTTTGGTGGACtggaaataataagaataaaaaataaataaaaaatacatgtaataactTTACCATCAGGAAGGTGGCCTACGTGTACAATGCTAAAGTATGCATACCTCAGATAAACTACTTtttgggaaggaaaaaaaagtctcaGCCACAGAATGCATATAACCTGTAGATTTTGCATGGGTTTTGtataaatactgtttaaaatagcTGCTTGCACATAATACCAGAAAAACCTCCAAAACTGCAATTTGCTTCTACACTAGATTTTAGGTTTGTTGGGGTTTTCTGAGATGCTTTGTCTGTATTTTGATAATTGTgcatattatgtaaaaatgttgGTGGACCCATAAATTACCAGACTTTtttctaagaaaaaaaataatgttgctttaatgcatttcataaatTTTTACTCTTATATCATCGCTTGCTAGGAATAGCAAACCTGCTTTTTCTGCATCTGCTTTGCGTAGCTGTTGTAAGCTTTAAactaatatgtgtatttattgcttGAACTTCTGTGCATACCTTATGAAGCATTATGTCCTGCAATTGAGTCATGTATTCTTTCTACTATCATATGCTGATGACTGGGAATAGGATCCCCTCTGTATACAGTAAATTTGAACTGTAGcacaaaacatctgtttatgtatttggtggatacctttttgtttatttatcttttttgagGTAAACTAATTTTTGATACTTTTCATTACTGTGTACTGTGTTCATACCTTGAATTCTCTGACATTAGAAGTCATGGTTGAGAATTGTAACAGCTGTTATTTGTTCTGTATTCATGGCTTTTCActgctg

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09409 FOXP2_4; forkhead box protein P2/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138203 lncRNA downstream 568115 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 720491 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 909184 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 909776 7567204 ~ 7567567 (-) True G110270
TU138067 lncRNA downstream 918875 7558205 ~ 7558468 (-) True G110269
TU138400 lncRNA upstream 271283 8783905 ~ 8794062 (-) False G110520
TU138472 lncRNA upstream 497518 9010140 ~ 9014326 (-) True G110576
TU138492 lncRNA upstream 963860 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 1032873 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 1792309 10304931 ~ 10305247 (-) True G110720
AMCG00006549 mRNA downstream 52745 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006547 mRNA downstream 293789 8174241 ~ 8183554 (-) True AMCG00006547
AMCG00006548 mRNA downstream 307952 8169002 ~ 8169391 (-) True AMCG00006548
AMCG00006545 mRNA downstream 340132 8128879 ~ 8137211 (-) True AMCG00006545
AMCG00006543 mRNA downstream 356766 8090684 ~ 8120577 (-) True AMCG00006543
AMCG00006553 mRNA upstream 339121 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006554 mRNA upstream 345723 8858345 ~ 8869522 (-) True AMCG00006554
AMCG00006559 mRNA upstream 375069 8887691 ~ 8912003 (-) True AMCG00006559
AMCG00006562 mRNA upstream 682814 9195436 ~ 9197467 (-) True AMCG00006562
AMCG00006571 mRNA upstream 1058867 9571489 ~ 9587506 (-) True AMCG00006571
TU137983 other downstream 1388358 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 1691492 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 2460400 6014104 ~ 6016943 (-) False AMCG00006491
TU137277 other downstream 4311743 4164934 ~ 4165600 (-) True G109633
TU136502 other downstream 6147352 2324131 ~ 2329991 (-) True AMCG00006328
TU138386 other upstream 209766 8722388 ~ 8724352 (-) True G110507
TU138401 other upstream 275196 8787818 ~ 8794062 (-) True G110520
TU138464 other upstream 485015 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 1032873 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 1574656 10087278 ~ 10107285 (-) True AMCG00006579

Expression Profile