RNA id: AMCG00006551


Basic Information

Item Value
RNA id AMCG00006551
length 4227
RNA type mRNA
GC content 0.41
exon number 5
gene id AMCG00006551
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8644242 ~ 8660293 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAAAGCGCCTGCATGTTCTCACAGACAGCCCAATGGAGTCCGATGGAGAACCAAAGCAATCTGGAGCCCCTCACCTCTTGGAAGTCCTCGACAGTTACTCCTGGGGTGAGGACAATGACGAGAGCACCATCACACCGAAGTCATCACCCCTTCCCCGCAGAAAGACCTCCGTCTCATCAGATGATTCTGAGCCGGAGCCCCCAAGCGTGATATTGAGAAAAGTTTCCTTTGCAGATGCGTTTGGTCTAGATCTCGTGTCGGTGAAAGAGTTTGATACCTGGGATGTACCTATTAAATCATTCAGTGATTCCCCGGAGGGAGAAGCCCATGACTTTGAGgaatattttctttcatcttgGTTCACGCTACCATCCTCCCATTATGAACTCATGCAAAAAGTGTATGACCAGAAGGTAGAGTTGGAAAGCATTGAGTTCCTACCTGGTTTAACATCGATGAAGGGAGTAATCCGAGTCCTGAATGTAAGCTTTAAAAAATTGGTATATGTTCGTATGACTTTAGATGCCTGGAATAGTTTTTATGACCTGTTGGCAGAATACATCCCTGGTTCCAGTGATGGCGAGACCGACCAGTTTTCCTTTAAGATTTGCTTAGTGCCACCATATCAAAAAGAGGGAGCAAAAATCGAGTTCTGCATTCGGTATGAGACATCAGCTGGCACTTTCTGGGCAAACAACAATGGAGCAAACTATACACTTTGCTGTAACAAAAAGGAAGTTGTAAGAGAGaaacaacaagaagaaaatagcaataaaaacaagaaaagctgtttaaaaacaatcagcaaGGAAAATGTCACAGAAGTAAATGACACAGTGGTTCATGCAGAGACTCCagGTACAGCCAATCCTGAAAGGGAAGAAGCTGTTGGAGAAAGCTCTGAAACGCCTGTGCAGTATCCCAAAGTGCCTCGTGCAGCTGAAGCACAACTGGAAATACTGGTGGATAACAACCTGAATATCACAGGAATGAAAGAGAGCAGAGAAGTGCTTCGTTCATCAGACACACAAGACCATTACTTTCCAGGAGGTACTGAAGCAAAACAGAATCCAATTCCTACTGAAGAACAGGGGGACAtcagcacacacatacaatctCAGGACCCTGAAATAAGCACATCTTTGTCTGAGAGAACTGGACTCCTGCTTGAAGAGTGTGTGGATATCCAGACCAACAACAAGGAGACTACAAATCAGAAGCCACTGATAAATGACCAAATTCCTTTGTTGTCATTGCATAGTGATTTGAACAAAGACGACATACTACCATTGAAACAAGATGATAAAGAGGCATTTGGTCAAGAGGGAAAGGAAGATGCTACTTCGCTTCAACCCCTTGAAGACCAGACCTTCAATACTTATGAGAATGATGTATTGGATGGACTGGTCATTATTGAAGAGGAGGGTGTAACAGTCTGTGAAACAGACGTGGATGTGCGGGCTTCTCAGAGTAGACTATTGAACCATACTCCTGAAATAACTGTAACTTCTGCAGAAGTATTCATTGTCAGGGAAGACATTGAAGCTGCTTCTGCATGTACAAACAGGGAGAGCCAGAGTATCAGTGAACAGGATTCAAAAGCATGGGCACACATTGAAACTGAAGTCAATGGAGGGAATAGCACGGATCAGCCACAAAGCAACACAGAGAGTCCAGACGCAACAGGGAACGAGATCCCACTGGATCGAGGTATGTTAAGAGATATACCTTCAATAGTATTTGAGACTGCTAGTCCAGCATTTGATGATACAGCACATTATGGCATGAAACAGGAAGTGTGGGGTGCCATTCAAGAGAATGTGAAGGAATTGACATGTGACAAAGAGGAGATGGGAAGACAGCAAGACACACCGACCTGCACAGCCAGTTCCCTGGAGATAGCAAATGCTTATCCTCAGCTCCCAGCCGGTGTTTGTGAGACACCCATGGATGAGCTATCAATTCAGTATGAAGCTGTTGAATCAATAGCAGCACAGTCACCTTGTGGAACAACAAGAGTAGTCCTTACTGAGGAAGAAGAGATTGTATCTGAAGATCTTGAAACCCCGGAGCTGAAACAAGGAGATCTTCAAATACAGGTGCTGCAGGACAGAAAGCAGAATGAAGCAGCTGGAGAGGGATTTGTCTCAGATTGGTGTTTTGAACATGTTGAGAGTGCTGCTGTACAGGATACTGGTCATATACAAGACATTTCTCACTCCTCAACAATCGCAGAGCAGGAATGCACAGATAAAGAAACCATGCCCAATGTAGAACACTACCAGACTGCAGAAGAGACTTTGATGAACAccaaaagaaatggaaaaacacccGAAGAATTAGAAATGTACTCTTTCTCTGCAGAAACAGAAAGGGAACCGGAACTTCCTGTGCCCACACACATGCTTTTGAGTGACAGAAGGACAGTTTTAGATGTAgtacaagaagaagaagaagaaaaagaagaggaaaaaggaGCAGATGAAGGTGGAAAAGATAAAGACATCAACACAGATCATCGGTCTTCCATCACAGGTGGCAAGATGGACTCAAGACCAAGAGGTCCAGCAAGGAGTAGTCGTAAGAGAGGGGCGTTCCACCATGCCTCCAGCCACAGGAGGGAGAGACACAGCACACTTTCTCCATTCCTTGGCAAAAGATCTATTGAGGACAGCAGTCAAAATTTGCGTAAACCTGTTATATTAGTAAGCCAACCTGCATGCGataaaagtgaaagtgaaagtgaagaTGAAGACGAAGCCCTCAGAGAAGACCAGGCACAAGCAGAAGACTCAGAGAGGCATCCAGGTAAAGAGCAGGCTGCTGGGGAAACAACAGAATATGAGGGAAGAAATGATCTAATTAACTGGAATGGAAAACTATTGGGTTGGCATCATGTTTCGAAAgagttaatatatttaatcctGTTTATAATCTTTCTTGTAACAGCCTATCATTATGATTTCATGGCCTGCTTTGTACtttacatattttctgtgtaCTGGCTGTGTTGTCAGAAGGGCAAACAAGGAGAATCGTTTGCACGGAAGTGACATATCACTGACTTACAACACAATGGGGTTTACTATTCCGAGGGCTCAGCAACTGCCTTTTGTTCCAATGGGGCACCATCGTGACGTTTACTTGAAGGTGGTGGTGGGTAGTGTGGGTTTTAGCTGTCACATTAGCTCATGATGTAGTTTTATGGCAAATTGTACACCTCAGCTGAAGTTAATCTGAATGGGACGAAACATTAATCAAACGAGCACGCAAAGTAAGGAAGTTGTGTGAGGGGAAATACACGAAACAAACACGAAATGCTAAAATGCTTCATATTCTTACCATTTATAAAATACTAGATCAGTAAGaaagcacagaaaatgtccaaaaAGAACAAATGATGGAACtgatgtttaacaaaatatttaaatgaattatattgtttaaaacattagtaATTGAAACATGATTACTATTTAGCAAGTTAATGCCGTTCCCCAGATTCTTTAAGGATTACAATGTTATCtataacttattttgttttcatttctgttatttGGAGTCTTCTTTTGGACATTGGTTTGAAAgtgttcatttgtattatttatcttctCATAAGCACCTATAACAATGCACATCTTgtctctgttgtttttttaaattatttatttatttttatttaactttattatgtttttttcacccTAAAAAGCACCCATTTGTCATCATAACATACTTTGTCTGGCATCATTACTCACCTAGTGTCTGACAAATGATATTGGTGAGGTGTATAATTAATGTAACTCTTTCTACAACCACAGAAAGAGGAGTTGTTTCTGAATTGATTTATCTATTACTTATACATACAAGGGGTAtgaaaatcaattcaaataGGCTGCCTTTGAGAAACTCAAGGATGCAATATTGGTATATAAGTGTGGGCTTAATCAATTTTTAATGGACCATTGGGAAATTGGATCATTGGAAACTATGAATGAaagatttatttacacattcataCATGTATCTGTAGCTCAAATTTAATAGgcttaaattgtattgtgtCTACCAATGTTTGGCACGGagattttattcacatttagaGGATATCTGCTTTGTCATGGACCTAAATATGTACAATTAGAACATTGTCTTGCTGTGAATAAAATGACTTAAAGGAATGCAAACCAACAATTCCATAATTGTAACTTTGTGAAAAATGT

Function

GO: NA

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138306 lncRNA upstream 464554 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 465514 8178521 ~ 8178728 (+) True G110446
TU138302 lncRNA upstream 468669 8173328 ~ 8175573 (+) True G110444
TU138404 lncRNA downstream 134767 8795060 ~ 8795331 (+) True G110523
TU138446 lncRNA downstream 227393 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 796372 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1370133 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 1709422 10369715 ~ 10369931 (+) True G110722
AMCG00006546 mRNA upstream 400205 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006540 mRNA upstream 609410 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006539 mRNA upstream 643720 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006533 mRNA upstream 663148 7967991 ~ 7981094 (+) True AMCG00006533
AMCG00006529 mRNA upstream 677708 7955026 ~ 7966534 (+) True AMCG00006529
AMCG00006552 mRNA downstream 50457 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006558 mRNA downstream 67350 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006556 mRNA downstream 86301 8746594 ~ 8794059 (+) True AMCG00006556
AMCG00006555 mRNA downstream 139449 8799742 ~ 8807859 (+) True AMCG00006555
AMCG00006557 mRNA downstream 214180 8874473 ~ 8885595 (+) True AMCG00006557
TU138304 other upstream 467456 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 989048 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1731988 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2055843 6519865 ~ 6588399 (+) True AMCG00006501
TU137766 other upstream 2661333 5981196 ~ 5982909 (+) False G110023
TU138383 other downstream 62157 8722450 ~ 8724066 (+) True AMCG00006552
TU138516 other downstream 905920 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4350891 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12277204 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12388043 21048336 ~ 21049038 (+) True G112567

Expression Profile