RNA id: AMCG00006556


Basic Information

Item Value
RNA id AMCG00006556
length 4133
RNA type mRNA
GC content 0.43
exon number 6
gene id AMCG00006556
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8746594 ~ 8794059 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGCCAATCAGATCGCACGTTGTCGATTCCCGAACCTGCGCGCCGGTGCCCCGGAGGAGGAGCGGCTCAGTACTATGGAGCCCGTTTACAATGCTCGGTTCGGCGAGAAGGAAACCGACCCCGGCAGGACCCGAGCCGTCGGACCGGGAGAGGGCCAGCACCACAAACTGGAGCAGGAGAAACTGTCCGGAGTGGTTAAGAGCGTCCATAGGAAGCTGCGCAAGAAGTACAGAGAAGgagCACATAGTCTAGACGCGATGGGGGACTTCGATAAGATCTGGCGCGAGCACTGCGAGGATGAAGAGACGCTCAGCGAGTACGCCGAGGCCATGAAGAACCTAGCGGACAACCACTGGGCCAAGACCTGTGAAGGAGAAGGGCGCATCGAGTGGTGTCGGAGtgtTTGCCAGGAGTACTTTTTGGATGGTGGAATGAAGAGAATGCTGGAGAAAGATGAGAAAAGTGCTCGTCTCGCAATCGCCATGACTACAACTACATTTAATGCACAACAGCATCCAAACAATGGACCACTGAAGTTGAGTCACCAATCGGGGAAAATCCGCTTGCTGGATGTTGGCAGCTGCTTTAACCCATTTCTGAAGTTTGATGAGTTCCTGACCGTTGGCATTGATATTGTGCCTGCAGTTGAGAGCGTCTACAAATGCGACTTCCTCAacctgcagctgcagcagcctCTCCAGCTGGCGCGAGATGCTGTGGATGCCTTCCTGAAGCAGCTCCGCAACCCCATCGACGCCCTGCCCGGAGAGCTCTTCAACGTGGTGGTGTTCTCGCTCCTCCTCTCCTACTTCCCCTCGCCGTATCAGCGCTGGATCTGCTGCAAGAAAGCCCACGAACTCCTGGCTCTGAATGGACTGCTCCTCATCATCACGCCCGACTCCTCCCACCAGAACCGGCACGCCGCGATGATGAAGAGCTGGAAGGTGGCCGTGGAGTCGCTGGGCTTCAAGAGGTACAAGTACGTGAAGTTCTCCCACATGCATCTCATCGCCTTCCGTAAGGTCTCCCTGAACACCACCAGCGACCTCGTGAGCAGGAACTACCCCGAGATGCTGTACATCCCGCAGGACTTCAACAACGCCGAGGAGGAGGAGTACGCCGACGTGCCAGTGCAGATCCGATCCGAGCCGGACGAGGACCAGATCGCCTGCGGGTTCATGGAGCTCCCTGAAGCACTTTATGACTCGGACTCCGGCGAGAGCCAAGCCAGCTCCGGAATGTTCCACGAGATGGAAGACCCCATTTTACTGCAGAGCTAATGGACCGGACACTTAGAGCAAAGATGGGGCGGGGggggattaattaaaaaatgccttTTATTGTCTGAGCTGCTGTGTTGCCAAAATAATTCTGCTGTATTTCAATGCTCTgtgtgtaacaaaaaaaaaatgcagtttgcacaggaaaaaaagaagaagtacAGAAGTGGGTTGTTTTTTCTACGTCTGATATGAAATTAACAATATATCTGTATGGGggcttttttaaatgaaaaggattGACCATTGAATGCCTTCAGGATGGATAATGGGTCTCATCCTTCATGTTCATTCTATCTTTTCATTCGTCACGGTGGACCATCGGAATAATTCATATAACATTGAAGAATGCTTCACGCTCGTGATGcagtcatttgttttgtatccAGGAGGCAGATTAGTTCATCTAACATTTAAAAGCCAAATACTGAACCAACCTGAGGACACACACGTCAGACTCTTTCATGTTGGCCTCACGTTTGTCGGGCGGGGAATAAGGTGTTAGGTGTGAGGAGAGAAACTTCTTGAGGAAGTTTTTGCTGACTGCCTAGAGTTAGGCTGTAATTTGCACCCACTTCTTTGTGTAATTGTGCATTTAGTCTGATAGAGCTCTTTGTTAAATTTTCTTGACGAACAATGTGTTCTGTTCACTTTTGAACAAACTGGTGTTGGCCGTTTTTTAAGGCAACAATACCATTTTAACCTAGCATCTTTTGGCTGCTGACACTGGGAACCTCTTAAACAAATTGATGTCTGTAACATTTTAAGCTTCTCCAGCACTTTGCCGATATGCATATGATTTTTGAATTTTATTGTTGTGAATCTGTGAAAAAgaacaatgttttctttgatAACCATAgactgtaattacttggtacTTGTAATGCGAACCATTTAGACTGCGATTCATCTCTGTTCCAggcttttgtatgttttatatgtttatcAAATGTGTAGGTACTGGCCAGTTGGCATAATTCATTGAAAGCCTGTTTGATCataaaacatgtcattttttCAGGATCcagtgtttcagtttttaacGTGCTGCCATTTTGAATATGGAATGAGGGGCAACCTACCAAAACTGATTATAAATTCCTGGGAGAATATCAATATCTTTAATAAAATCTCCACTCCAGGAAATACTTCAAATCCAAAACTGCTTACAGTTTCAAGCAGCTGTTCCTTTCATCAGCCAAAAGTTATTTGACACGAAAGACATTTTTCCAAATGCCTTTGTGTTGAGCTGTCAGTGTCTCGtacttctttaaaataatttacctCATAATGAGGTTTTGCACTAATACCCTCTCTGGTCTCAGTCATAGCTACTTTTTTGCTTTGAGTGCATTTCTGCAATAGCTTGGTGTGACCTAAAAGAAGTACTGTATACAATATTGTGGAGAaatgttgttattgttcttaATAACACTAGCAAACTAGCTGATAACATGTTGCACTTCTTTATGAATTATATTTCTTCAGGTTGACGAACCTTCTGTATAGTGTTAATTTGTGGCACTTTatctgatttgttgtttttatcccGGAGGGTGCCAAAACCTATGAATATAACAATATTAGTACTTGTATTGGGTAACCAGTAGGTACGGCCAAATAAGGAAATGGCTGCAAGATGCAGTAAAAAATACTCACTGAGATTGAGATCATCAAGCCAATTGTCCTTCATTATTAATGAGGCCGTGGATCGGGGTGCCTTTTCAGACAAATCGCTTCCCTTTTTGTCCCcagattgtgttttctgttcaaGTTCTGTGTGGTTTGAAGCCAACAGCTTGAAGCTGAAAAAAACTTGCCAAATAAAGAAGTGAATCTCAGTGAGATCTTCCCCAAGGAGAATCATCACACATGAATCATAAATTGACATAAAAATGCTAAATTGAATCTGAAACTACAAAGATCTTAAAGAGCATACTAGTCCTAGTTGTAATGCTAATTGCCTTTACATGTAACCCATTTAGCTTAATATTGGAGGTCTATTTCCCTTTCCTGAGTAGGTTTAGCATTCTTCTCACCGCTACTTATACTGTTTGGTTTCAGTTGTATTGCtcagtttttgctttttgacataCATTTGCCAATATGTATGCTTCATAAGTTCcactacttttttatttttccaaacctatgtaaaaaaaaaaaataaaaataaaaaaagtttctttACATTGTGTGTAGTTCAGTTGAAGCCTTGCTGTATGATACTTTACAGGACTAGATGTCAGGTTCTTTGCATTGAAGGCTTCAGATCTGCTGGAAGACACAGGAGTGTAAGAATctactttaatttgtttttcctattttcctTTGACTTTCTCATTTCAGTTACTTAAAGGAGAAGGTGAATTACtcatggttaaaaataaatccagtggAAAAAGAATCTCTCTCCAGTGCATTGAACTGACTGTCAGGCTTTTTTTAACTGCCATTTTAGATGGCTTGCTGTATGGaaactacacatttaatttaacttcatGAAAGTAAATTCAATGGCACAATATCTGAGGGAGTCATGGATTTacttgtaataaaaatgtattgatggaTTGTAAAGCAGTCTCACAAAAGTAGAATAAAATCTGAatcaagagggagagaggagagggcaGAGTAAAAGCCTTACAGACTGCTTTCTTTTGAAACCTTGCTGAAATGTGGATGTCCACAAAGCCTTTAAACATAATGGATTTCAGTAGGGTTTCCCAGATTTGTTGCTCATTTTTCAATCTCCCCAGAACCGTCAGTTAGAAGTCTGATATTTGCATCAGTCCCGTTAAAGCATATGGAGGATAACGGTAAACCCAAGCGATCATCCTTGTTATGGTGC

Function

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0016433 rRNA (adenine) methyltransferase activity molecular_function

KEGG:

id description
K18849 BMT2; 25S rRNA (adenine2142-N1)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138306 lncRNA upstream 566906 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 567866 8178521 ~ 8178728 (+) True G110446
TU138302 lncRNA upstream 571021 8173328 ~ 8175573 (+) True G110444
TU138404 lncRNA downstream 1001 8795060 ~ 8795331 (+) True G110523
TU138446 lncRNA downstream 93627 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 662606 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1236367 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 1575656 10369715 ~ 10369931 (+) True G110722
AMCG00006558 mRNA upstream 18268 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006552 mRNA upstream 23940 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006551 mRNA upstream 86301 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006546 mRNA upstream 502557 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006540 mRNA upstream 711762 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006555 mRNA downstream 5683 8799742 ~ 8807859 (+) True AMCG00006555
AMCG00006557 mRNA downstream 80414 8874473 ~ 8885595 (+) True AMCG00006557
AMCG00006561 mRNA downstream 118221 8912280 ~ 9009240 (+) True AMCG00006561
AMCG00006560 mRNA downstream 242412 9036471 ~ 9059363 (+) True AMCG00006560
AMCG00006566 mRNA downstream 680741 9474800 ~ 9476828 (+) True AMCG00006566
TU138383 other upstream 22528 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 569808 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1091400 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1834340 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2158195 6519865 ~ 6588399 (+) True AMCG00006501
TU138516 other downstream 772154 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4217125 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12143438 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12254277 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 12348806 21142865 ~ 21203201 (+) True G112600

Expression Profile