RNA id: AMCG00006557


Basic Information

Item Value
RNA id AMCG00006557
length 2373
RNA type mRNA
GC content 0.51
exon number 16
gene id AMCG00006557
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8874473 ~ 8885595 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCTGCGGTGCTTCTGCGGAGTGCGGGCGAGGGCAGGCGGAGGGTCAGGGCAGGTCATCGCCGTGTCGTGGTGCCTCTGCAGCTCCTCACACAGAAGATGAGCCTGTAGAAGACGCCAGCAAACCaatgcagtgttcaGTCATTGCTGATAATCAGACACAGTCAAGTCATGGCGAAGAGGATATAGAAGGAAAAGATGAAGCCGTAGGAGAAATTGAAAACATGaatgcaGACATTGCTAATAATCAAACACAGTCGAGTCATGATGAAAGGAATACAGTAAAAGATGAAGCTGtagaagaaactgaaaacatgaactcaGTCATTGCTGATAATCAGACACAGTCAAGTCATGGCGAAGAGGATATAGAAGGAAAAGATGAAGCCGTCGGAGAAATTGAAAACATGAAcGCATTCATTGCTGATACTCAAACAGAGTCGAGTCATGATGAAAGGAATACAGTAAAAGATGATGCTGtagaagaaactgaaaacatgaacGGGCTCATACCTTTTCCAGATGAATGGTACAATGAAGGAAGGTTCCTGAATGGAGCATATGAGCTGGTATCCAACCACTGCCAAGCCCCCCCAAGTGGCTGTCATCTTGTAAATACTGAGCCAAATGTCCTGGAAGATGGCCGTGCCGGTGGGCTTTACATCCCAGGAAAAGGAATGGTCATGACATACATGTTGGAGGAAAGAGCCAACGTCTGCAGATACTTCGATGCTTCGTCCGGAACGTGGCTGCTCTTGCCGCTGCAGTGGGAGATGAACTTAGACTTCGTCAGAGAACGGGTCGAGCGAGTAatgGGAGTCCTGCCAGGCCTGGTGGATGAGAAGGAGATCGTGGGAGCCCTCAGACAGTGCAACTATGATTCAGACGAAGtcatttttgtttatctttcCACCTTTGGAGACATTCTTCTGCAGCCACCAGAAGGGGACAGAATTATTGAAGATCTTGAGCAGAAACTGCAAGACAAAGAAAAGGAGATGGATGACTTGGTCCAGAAGAATAACTATCTGTCCGAAGAGTATAGGTACCTGTCAGAGGACTTGCAGCCCTTATATGGTAGAGTGGCCGAGCTGGAGGCAGACAAGGAGGAAGCCAGTGAGAAGATCAGAGCACTGCTGGCCACAAGACCCACCGGCCCTGATGCGGACTTGGCTCCCAAACCATCTGTCAACTCCAGCCAGCTGCTGCAGGTCGGCACGCTGATCAGAGACTTAAACATCGCCAACAAGAGCCTGAGATCCACGGTGAAGCACATGTTCTCCGAAATGGGGCACCAAATGGAGCAGCTGTTGAAGGCGGCACTTCGTATGAAAGAGGCCCAGCAGAATTCCACCACTGACTTCGAGGAGCTCCGCTCTCTGTACCGGAGGGAAGCCATGGAGAGGAAGGCGCTCTACAATAAGCTGCAGGAGCTGTGCGGAAATATCCGGGTGTTCTGTCGCTGCAGGGGTGACTCGGCGGCCGACACCTGCCTGGATGTCCCTTCTGATGAAGAAGTTATTGTAAACCAAAAGGGATCAAAAAAGACGTTCTTCTTTGACAAAGTGTATCCTTCCAGTGCTACGCAGGAAGAAGTGTTTAACGAAGCCCGTGCGATCATCACCTCCTGTGTGGATGGATATAACGTCTGTATACTGGCGTACGGGCAGACAGGCTCTGGGAAGACATACACGATGATGGGTCCCAAAGGAAATCCAGGAGTGAACATCAgGTCAATCAGGGAGCTTTTACATATCTGTAAACAGAGAGAAACGATCACGTATGTACTCAAGatctCCATGTTAGAGATTTACAACGAAAGCCTTAATGACCTCTTAGCCCTAAATCAAACCAGTCAGCTGGAGATTCAGACTCGGGGCAAAGCCGTCACAGTCCATGGCTTGACGCAGATCGAAGTGAACACCGAAGACGACATACTGAACATCGTGGAGCTTGGAGAACAAAACAGAACCACAGCTTCGACCAAAATTAACATTGAGAGCTCGCGCTCTCACCTCATCGTGACCCTCCACGTGGACGGCACAGACAGCGCGTCCGGCGTCACGTCCCATGGCTCGCTCATGCTGTGTGACTTGGCCGGGTCAGAGCGCATCTCCAAGACCGAGGCGACGGGGCAGAGGCTGGTGGAAGCAGCGGCCATAAACAAATCCCTCACGTCTCTGGGGCAGGTTTTCAGCGCTTTGAAGTGCAACGCGCTACACGTGCCCTTCAGGAACTCGAAGCTCACACGCCTGCTTCAGCCTTCGCTCAGTGGAGATGCCAAGgcctgtgtgtttctgaacGTCAGTCCGGACATGAACAACTTGGCGGAGACTCTCAGCACACTTCAGTTTGGTTCCTCAATTCGGCAG

Function

GO: NA

KEGG:

id description
K10406 KIFC2_3; kinesin family member C2/C3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138404 lncRNA upstream 79142 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 694785 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 695745 8178521 ~ 8178728 (+) True G110446
TU138303 lncRNA upstream 698900 8174241 ~ 8175573 (+) False G110444
TU138300 lncRNA upstream 699291 8174241 ~ 8175182 (+) False G110444
TU138446 lncRNA downstream 2091 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 571070 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1144831 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 1484120 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 2234795 11120390 ~ 11120735 (+) True G110849
AMCG00006555 mRNA upstream 66614 8799742 ~ 8807859 (+) True AMCG00006555
AMCG00006556 mRNA upstream 80414 8746594 ~ 8794059 (+) True AMCG00006556
AMCG00006558 mRNA upstream 146147 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006552 mRNA upstream 151819 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006551 mRNA upstream 214180 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006561 mRNA downstream 26685 8912280 ~ 9009240 (+) True AMCG00006561
AMCG00006560 mRNA downstream 150876 9036471 ~ 9059363 (+) True AMCG00006560
AMCG00006566 mRNA downstream 589205 9474800 ~ 9476828 (+) True AMCG00006566
AMCG00006563 mRNA downstream 593908 9479503 ~ 9484141 (+) True AMCG00006563
AMCG00006564 mRNA downstream 644638 9530233 ~ 9560060 (+) True AMCG00006564
TU138383 other upstream 150407 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 697687 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1219279 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1962219 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2286074 6519865 ~ 6588399 (+) True AMCG00006501
TU138516 other downstream 680618 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4125589 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12051902 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12162741 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 12257270 21142865 ~ 21203201 (+) True G112600

Expression Profile