RNA id: AMCG00006558


Basic Information

Item Value
RNA id AMCG00006558
length 684
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00006558
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8727643 ~ 8728326 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGTGGACGTTGTCAGTGGCTATGGCTTTCCCCCCAGTCTTGGACGTGGGGACCTATTCTTTCATCAGGGAAGAAGATCAATGCACCTTCCAGCACCGATCCTTCAGAGCCAACGATTCCCTGGGATTTATGCTCCTCCTAGCCCTCATCCTTCTGGCCACTCAGCTTGTCTACCTCAAGCTAATCTTTTTCGTCCATGACCGCAGAAAAATGAAACCAGTCCAGTTTGTGCCGGCTGTGAGCCAGAACTGGACATTTCACGGTCCAGGAGCCAGTGGTCAGGCGGCTGCCAACTGGCTAGCTGGCTTCGGAAGAGGCCCAACCCCACCAACCCTGTTAGGAATAAGGCAGAATACCAATACGGCAGGCAGGAGAAGGCTTCTGGTGTTGGACGAGTTTAAGACTGAAAAGAGGATAAGCAGGATGTTCTACATAATGACGTTCTTCTTTCTCACCTTGTGGGGCCCCTATCTGATAGCTTGCTATTGGAGAGTGTTTGCCAGGGGGCCAGTTGTGCCAGGAGGGTACCTGACAGCTGCAGTCTGGATGAGTTTTGCCCAGGCAGGAGTCAATCCATTTATCTGCATTTTCTCCAACAGAGAGCTGAGGCGCTGTTTCAGCACAACACTCCTCTACTGCAGAAAATCCAGGTTACCTAGGGAACCCTACTGTGTTATATGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138306 lncRNA upstream 547955 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 548915 8178521 ~ 8178728 (+) True G110446
TU138302 lncRNA upstream 552070 8173328 ~ 8175573 (+) True G110444
TU138404 lncRNA downstream 66734 8795060 ~ 8795331 (+) True G110523
TU138446 lncRNA downstream 159360 8887686 ~ 8888492 (+) True G110558
TU138486 lncRNA downstream 728339 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1302100 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 1641389 10369715 ~ 10369931 (+) True G110722
AMCG00006552 mRNA upstream 4989 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006551 mRNA upstream 67350 8644242 ~ 8660293 (+) True AMCG00006551
AMCG00006546 mRNA upstream 483606 8222881 ~ 8244037 (+) True AMCG00006546
AMCG00006540 mRNA upstream 692811 8026690 ~ 8034832 (+) True AMCG00006540
AMCG00006539 mRNA upstream 727121 7993931 ~ 8000522 (+) True AMCG00006539
AMCG00006556 mRNA downstream 18268 8746594 ~ 8794059 (+) True AMCG00006556
AMCG00006555 mRNA downstream 71416 8799742 ~ 8807859 (+) True AMCG00006555
AMCG00006557 mRNA downstream 146147 8874473 ~ 8885595 (+) True AMCG00006557
AMCG00006561 mRNA downstream 183954 8912280 ~ 9009240 (+) True AMCG00006561
AMCG00006560 mRNA downstream 308145 9036471 ~ 9059363 (+) True AMCG00006560
TU138383 other upstream 3577 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 550857 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1072449 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 1815389 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2139244 6519865 ~ 6588399 (+) True AMCG00006501
TU138516 other downstream 837887 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4282858 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 12209171 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12320010 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 12414539 21142865 ~ 21203201 (+) True G112600

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053369 True 3035 mRNA 0.47 2 NC_007115.7 6643421 ~ 6647605 (+)
grasscarp (Ctenopharyngodon idella) CI01000335_00526951_00528066.mRNA False 2708 mRNA 0.48 1 CI01000335 526951 ~ 529658 (+)
rainbow trout (Oncorhynchus mykiss) TU1978600 True 2976 lncRNA 0.45 2 NC_048585.1 31493567 ~ 31497790 (-)
eurasian perch (Perca fluviatilis) TU84211 True 347 lncRNA 0.46 1 NC_053117.1 19096786 ~ 19097132 (-)
mexican tetra (Astyanax mexicanus) TU84211 True 3194 TUCP 0.48 2 NC_035903.1 6851230 ~ 6855762 (+)