RNA id: AMCG00006559


Basic Information

Item Value
RNA id AMCG00006559
length 1677
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00006559
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8887691 ~ 8912003 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTCGGCTTCTCTGATTGGTTCGCTGGGCCCGTTCGGCTTCTCTGATTGGTTCGCTGTCACCGATTCTGGATGACGTGGCACCCTGGTGGAAAGCATGGCTGCCGCTCATATAGAGAGAAACATTGCAGAGGGGCAGGACTCGATTCTGGAGCCATTGTCTTTACCGGAAAGTCCAGCCATCAATGTATCTGCAGACAGGGGCGCACCGGTCCCCTGCATCCTGTGCTCAgagtctttctctctgtctgaaaCGGAAACGCTTCTGAAGCACTTCATCCTCGAACACAGACTGGTGATCGGCGACGTCAAACTCATCGCTGACTTTCGGAGatacATCCTGTACTGGAGGAAAAGATTTACcgagcagccaatcacagagttCTGCAGTGTGATCAGGACCAATGCACAAGCCCCCGTCGAACGGCAAGAGGATTACTTCCTTTTGTGTGATGTTTTACCAGAGGATAGAGTTCTCCGAGAGCAGCTCCAGCAGAAGAGACTTGAAGAGATCCTGGACCAGCAGCAAAAGGAGAGGGATGACTCCAGTTTCCACCGGGCCTGTATGTTCTGCAGTGAGGACTTCTCTGGAAACAGGTCGCTGCTTCTGAACCACATGGCGAAAGAACATGGATTCAATGTTGGGCTTCCAGACAACATTGTCTACTCTGAAGAGTTTCTGGACACACTGCAGGGGAAACTAGACAATTTgcagtgtctgtactgtgagaaGACCTTCCGCGACAAGACCACCCTGAAGGACCACATGAGGAAAAAGCAGCATCGCCGGATCAACGCTAAGAACCAGGAGTACGACCGCTTCTATGTCATCAACTACCTGGAACTTGGGAAGACATGGGAAGAAGTTCAGTCCGAAGATGACCGTGAGATGATGGAAGATCACGACGACGATTGGTCTGACTGGCAAGAACACCCTCTGTGTGCCGTCTGTCTTTTCTGTGATCATCAGTCGGAGACCATGGACGAGATCTACAGCCACATGGAGGAAACGCATGGTTTTGATCTTCATAAATTAAAGGCAGAATTAGGTCTGAGGTTTTACCAGCAGGTGAAGTTGGTGAATTTCATCCGACGGGAGATCCACCAGTGCCGATGCTATGGGTGCCAACAGAAGTTCAGCTCTAAGGCCGAAGTTCTGCTGCATCTGACGGAGGCAAAGCATGTCATGGCACTGCCAGAGATGTCCAAGTGGGATCAACCCCAGTATTATTTCCCGACCTATGAGAACGACGCCTTCCTCTGCGCCCTGTCTGACAGCGAGAACGAATCGGAAGGCGCTGGAGATGGCAGAGACGTCCCTGTAATTGCTGAAGACATTTCAAACCTGAAAGCTCTTAAGCAGACAAGTGTACTGAAACAGTTGCTCAAAGGGAAGAACAGCACAAGCTAGAGTAAAGAGCAGTGTGTTctgttgtttgtctgtgtgtccgtGATGAATACATTTGGCACCCACATTGGGATGGAACCTGATTAACTGGGAACTATAAATGCTGTTTCACAAGTATTTAAAAGAAGTGTCcccaaatattttattacttttttttgtaaatgcttaAATATCATGGTCTCTGTATTCTATCCTCTCCGAATCTTTATTACACTGCCTTGAGAACTTGAAACCCTCTGATTAATGTATCAATAAAATCTGTAAATATGAa

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138400 lncRNA downstream 93629 8783905 ~ 8794062 (-) False G110520
TU138203 lncRNA downstream 978463 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 1130839 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 1319532 7567888 ~ 7568159 (-) True G110271
TU138068 lncRNA downstream 1320124 7567204 ~ 7567567 (-) True G110270
TU138472 lncRNA upstream 98137 9010140 ~ 9014326 (-) True G110576
TU138492 lncRNA upstream 564479 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 633492 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 1392928 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 1509558 10421561 ~ 10470060 (-) True G110733
AMCG00006554 mRNA downstream 18169 8858345 ~ 8869522 (-) True AMCG00006554
AMCG00006553 mRNA downstream 31017 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006550 mRNA downstream 375069 8477343 ~ 8512622 (-) True AMCG00006550
AMCG00006549 mRNA downstream 463093 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006547 mRNA downstream 704137 8174241 ~ 8183554 (-) True AMCG00006547
AMCG00006562 mRNA upstream 283433 9195436 ~ 9197467 (-) True AMCG00006562
AMCG00006571 mRNA upstream 659486 9571489 ~ 9587506 (-) True AMCG00006571
AMCG00006570 mRNA upstream 676928 9588931 ~ 9592122 (-) True AMCG00006570
AMCG00006573 mRNA upstream 693535 9605538 ~ 9606425 (-) True AMCG00006573
AMCG00006572 mRNA upstream 712082 9624085 ~ 9625892 (-) True AMCG00006572
TU138401 other downstream 93629 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 163339 8722388 ~ 8724352 (-) True G110507
TU137983 other downstream 1798706 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 2101840 6785313 ~ 6785851 (-) True G110140
TU137807 other downstream 2870748 6014104 ~ 6016943 (-) False AMCG00006491
TU138464 other upstream 85634 8997637 ~ 8999264 (-) True G110570
TU138509 other upstream 633492 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 1175275 10087278 ~ 10107285 (-) True AMCG00006579
TU139024 other upstream 3105879 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 3225179 12137182 ~ 12140393 (-) True AMCG00006625

Expression Profile