RNA id: AMCG00006561


Basic Information

Item Value
RNA id AMCG00006561
length 5067
RNA type mRNA
GC content 0.48
exon number 48
gene id AMCG00006561
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 8912280 ~ 9009240 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGATACCTACAGAACACGAAAAATACGGCGTCGGCGCTCTCACATTAGAGATGTACAGACTTGCGGTCCTTGCAAACGTCTTCAGCACATATGtgctgGCCAGTTTTCGAGGGACGGTACAACATGGCTTGTCACTGGAGATTGGCGACACCGTACAGATTCTGGAGAAATGCGaaggcTGGTACAGAGGATTCGTTCTTAAGAATCCAAATGCTAAGggAATTTTCCCCTTGAGCTACATTCACCTGAAAAATGCGAATATCAAGAACAAAGGGCAATTTGAAACAGTCATTCCTACAGAGGATTCGGTTATCACTGAGATGACATCAACTCTGAGGGACTGGGGCACCATGTGGAAGCAGCTTTATGTGAAAAACGAGGGGGACTTGTTCCACCGGTTGTGGCATGTAATGAATGAGATATTAGACCTGCGCAGGCAAGTTCTTGTGGGCCACCTGACTCATGACCGAATGAAAGATGTGAAGCAGCACATCACCGCACGGCTCGACTGGGGAAACGAACAGCTGTGCTTGGATCTTGTCCCAAGGAAAGAGTTCAGCATGGTAGACCCAGATGAAATCAGCGTTACAGAGCTGTATAAACTGATGAAAAGCCTCATGTCCtccaacctgggagaagaactCGAGGTTTACTTTTCCATCTATGACAGCAAAGAGAACCGCCCGATCAGTGAGAGATTCTTTGTGCGACTGAATAAGAACGGCTTACCAAAGTCACCGGAGAAAACCGAGAGACAATGCACCCTGTTTGTAGATTTGGGAAGCAGTGACCTACGAAAAGATGTGTATATCACCGTTCACATTATAAGAATAGGGCGGATGGGAGCGGGAGAGAAGAAGAACGTGAGCAATGTGCAGTACAGGCGTCCCTTCGGCTGTGCGGTAATCAGCATAGCGGACCTCTTGACCGGGGACTCGAAAGACGACCACATTTTGAAGGTTTACACGTGCAACACGGAAAGTGAGTGGTatcaaatacatgaaaacattatCAAGAAAGTGAATGCCCGTTACAACCTCACCGGCTCCAATACTGGTCTTGCAGTTTCTCTTCAGCTGCTCCATGGAGACATCGAGCAGATCCGACGAGAGTACATGGTGCTCTTTACTCGTGGTGTTGCGATCACAAAGAAACTGGGCTTCTCTGATATCATCATGCCAGgGGAAATGAGAAACGATCTGTATGTCACTTTGGAAAAAGGAGAGTTTGAGAAAGGTGGAAAGAGTGTAGCTAGAAATGTCGAGATCACAGTTTTTCTCTTGGATTGTGATGGCCAGGTGCTGAAGAACTATGTGTCAGCAGGCTCTGGAGAACCAGCAGGCGATGAGTTTCACTCGTTCGTGCTTTATCACAACAACAGCCCCAGATGGGCCGAGCAGATAAAACTGCCTATCCCTGTGGATAGGTTTCGAGGATCGCATGTCCGTTTCGAGTTCAGGCACTGCTCCAcAAAAGAGAAGGGGGAGAAGAAGCTGTTTGGCTTCTCCTTTGTCCCATTGATGCAAGAGGATGGCAGGACCCTGCCAGATGGGACCCACGAGCTCATTGTCCACAAGTGTGAAGAAAATGCAAACCTCCAGGAGTCTGCTCGCTACCTCAAGCTGccattttcaaaaggaaatctCCCAGGAAACAATCAGGCTGTGAAAACCACTAAGGAGTCGTTCTGGATCACATCGTTTCTCTGCTCTTCTAAACTCACACAAAATGGTGACATGCTTGATCTCCTTAAGTGGAGAGCTCACCCTGACAGGATAACTGACAGCCTGTCCAAATTAAAGGAGATTGATGGCTCAGAAATTGTGAAGtttttacaagaTACACTGGATACTCTATTTGGAATTTTAGATGAAAATTCTCAGAGATACGGGTTGAAGGTTTTTGATTCCTTAgTTCACATTATAAATTTGCTGCAGGACAGCAAATTCCAGCATTTTAAACCAGTCATGGATACCTATATTGAGAGTCACTTTGCAGGCGCTCTGTCGTACAGGGACCTTATTAAGGTACTGAAGTGGTATGTTGACAGAATAATCGAAGCTGAACATCAGGAACACATTCAACAGGTGCTCAAGgCCACAGAAtacatctttaaatatattattcagtcTCGTCGCCTGTTTTCCCTGGCCACCGGAGGCCAGAACGAAGAGGAATTTCGATGCTGCGTTCATGAGCTTTTCATGTCCATCCGATTCTTCCTTTCTCAAGAAAGCAAAGTGGCTAGTCCCATTACCCAAACTCAGACCTTCCCAGCGGTCTACTGCGAGCTACTGAAGATCTTCAACGTTCGGGAAGTGGCGAACTTTGTCAGAGAAACCCTGGGCAGTCTGCCAGTGATCGCACATGCCGATTGCCCCCTGGAAGCTGTTAAACTGCAGTGCATTGCAAAAACAGTGGAGAGCCAGCTGTATACCAACCCCGATTCCCGCTGCATCCTTCTGCCAGTGGTTTTGCACCATCTACAGATGCATCTGCAGGAGCAAAAGGATCTGGTGATGTGCGCGCGCATACTGAGCAGTATGTTCTCTCTCATCAGGAAAGACGGCACAACAGAGGTGTCAATTTCCGAAGAGGTGGATTTGATTGTGGAGAGCCTGTTGGGCGTGTTGCTGAGAACCATATTAGAGATCACCAACCGACCACAGCCAGCTGGAACGGCCCTGCGCCTGCAGTTCCAGGACGTCACGGGGGAATTTGTGGCTTGTTTGCTGGCTCTTCTCAGACAGATGACAGATAAACACTACCAACAGCTCCTGGAAAGCTTTTCCAACAAAGACGACCTGAGGGATTTCCTCTTGCAGATCTTTACGGTGTTTCGGATTCTCATCAGACCAGAGATGTTCCCAAAAGACTGGACTGTCATGCGGTTGGTCACCAACAATGTAATCATCACTACGGTGCTGTACCTGTCAGATGCTCTGCGCAAGAACTTCCTGAATGATCATTTTGACTACAAGgTGTGGGATTCCTATTTTTACCTCTCTGTAATATTTATAAACCAACCCTGCCTCCAGCTGGAAACCTTCTCACcatccaaaaagaaaaaggttttagAAAAGTATGGCGACATGAGAGTCATGATGGGATGTGAGATCTTTAGCATGTGGCAAAATCTCGGGGAGCACAAGCTGAATTTCATCCCTGCCATGATCGGGCCCTTCCTGGAAGTGACGCTCGTCCCGCAGCCCGACCTGCGCAACGTCATGATCCCCATTTTCCACGACATGATGGACTGGGAGCAGCGCAGGAGTGGCAGCTTCAAACAGGTTGAAGCCAAACTGATAGACAAACTGGACAGCCTGATGTCTGAGGGCAAGGGGGACGAGACCTACCGGGAGCTTTTCAACAGCATTTTGCTAAAGAAGATTGAGAGGGAGACGTGGAGAGAGAGTGGCATTTCCTTAATAGCCACCGTCACCAGGCTAATGGAGAGACTCCTGGATTACAGGGACTGTATGAAGGTGGGAGAAGTGGATGGCAAAAAGATTGGTTGCACAGTTAGCCTTCTGaaTTTCTACAAAACAGAATTGAACaaagaagaaatgtatatacGGTATATACATAAATTGTACGATCTTCATTTGAAAGCACAGAACTACACGgAGGCCGCctacacactgctgctgtacgATGAGTTGCTGGAGTGGTCTGACCGGCCTCTCCGAGAGTTCCTCAATTACCCCATGCAGACCGAGTGGCAGAGGAAAGAGTACCTGCATCTCACCATCATCCAGAACTTCGACAGGGGAAAAATCTACGCCGTCGGCCCCATCCCGGAGAGCCAGGACGTGCTGCAGAGGGACGGGGTGCCAGACAACATTAAGAGCTTCTACAAAGTCAACCACATCTGGAGATTCAGATACGACAGGCCTTTTCACAAGGGCACAAAGGACAAGGAAAACGAATTTAAGAGCCTGTGGGTGGAGCGCACCACGCTCACGCTGGTGCAGAGTCTGCCTGGCATCTCACGCTGGTTCGAGGTGGAGAAGCGAGAACTGATTGAGATGAGCCCTTTGGAAAACGCCATCGAAGTGATCGAGAATAAAAACCTGCAGCTGAGGACCCTCATTACTCAGTGTCAGGCTCGACAGATGCAGAATATCAACCCACTCACCATGTGCCTGAATGGAGTCATTGACGCCGCCGTCAACGGGGGACTCGCCAGATACCAAGAGGCATTTTTTGTAAAGGACTACATCATAAATCATCCTGAGGATGGAGAGAAGATTGGACGGCTGAGAGAGCTCATGTTTGAGCagGCTCACATCCTGGAGTATGGGTTGGCTGTGCATGAGAAATTTGTACCTCAGGACATGCGACCTTTACATAAAAAATTGGTTGATCAGTTTCATCTAATGAAATCAAGTTTAGGAATACAGGATTTTCCAGCGTATGTCCGTGCTAGTCCTGTTCACTTCACCAATGGTAGTCCACGTATATGCAGAAATTCAGTGCCTAATGCCATAAGTCCCGATGGTGCTAGAGTCATAGCACGGCGCAGCCCCCTGAGCTACCCAGCTGTGAACAGATACTCCTCGTCGTCTCTCTCGTCACAAGCCTCGAATGAAGTCAGCAACATCACCGGGCAGTCGGAGAGCTCAGACGAGGTCTTCAACATGCAGCCCAGTCCGTCTACCTCAAGCTTAAGTTCGACTCATTCGGCCTCTCCCAACGTGACCAGCTCTGCCCCGTCCAGCGCTAGAGGTTCACCGTTGTTGTCCGATAAACACAAGCACTCCAGAGAAAATGCCTGCCTCTCGCCCAGGGATCGGCCCTGCAGCGCTGTGTACCCCAACCCTCAGGACCCCACGCAGAGAATGATCACTCATCAGATAGGAGAGAACTCCCTGCCGAGGAGTGATCCAAATCTTTCCACACCAGAGAAAGTAGTGAACCCCACCCCGAGTAGCTGGAGTCTAGACAGTGGTAAAGAAGCTAACACACAATTTTCAGAAACTGTTGGGAAGTTGGTATCCCCACCTGTACCACCTAGGCCTCAACACCAAGGTAAAAACAACTACGAAAAGGCAAAAGAATAA

Function

GO: NA

KEGG:

id description
K17697 DOCK4; dedicator of cytokinesis protein 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138446 lncRNA upstream 23788 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 116949 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 732592 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 733552 8178521 ~ 8178728 (+) True G110446
TU138303 lncRNA upstream 736707 8174241 ~ 8175573 (+) False G110444
TU138486 lncRNA downstream 447425 9456665 ~ 9456911 (+) True G110590
TU138618 lncRNA downstream 1021186 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 1360475 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 2111150 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 2340644 11349884 ~ 11350117 (+) True G110883
AMCG00006557 mRNA upstream 26685 8874473 ~ 8885595 (+) True AMCG00006557
AMCG00006555 mRNA upstream 104421 8799742 ~ 8807859 (+) True AMCG00006555
AMCG00006556 mRNA upstream 118221 8746594 ~ 8794059 (+) True AMCG00006556
AMCG00006558 mRNA upstream 183954 8727643 ~ 8728326 (+) True AMCG00006558
AMCG00006552 mRNA upstream 189626 8710750 ~ 8722654 (+) False AMCG00006552
AMCG00006560 mRNA downstream 27231 9036471 ~ 9059363 (+) True AMCG00006560
AMCG00006566 mRNA downstream 465560 9474800 ~ 9476828 (+) True AMCG00006566
AMCG00006563 mRNA downstream 470263 9479503 ~ 9484141 (+) True AMCG00006563
AMCG00006564 mRNA downstream 520993 9530233 ~ 9560060 (+) True AMCG00006564
AMCG00006565 mRNA downstream 554712 9563952 ~ 9568276 (+) True AMCG00006565
TU138383 other upstream 188214 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 735494 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1257086 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 2000026 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2323881 6519865 ~ 6588399 (+) True AMCG00006501
TU138516 other downstream 556973 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 4001944 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 11928257 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 12039096 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 12133625 21142865 ~ 21203201 (+) True G112600

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00048686 False 7428 mRNA 0.47 53 NC_007136.7 21517551 ~ 21716326 (-)
grasscarp (Ctenopharyngodon idella) CI01000335_00681430_00741137.mRNA True 6354 mRNA 0.51 56 CI01000335 681430 ~ 741222 (+)