RNA id: AMCG00006562


Basic Information

Item Value
RNA id AMCG00006562
length 1503
RNA type mRNA
GC content 0.45
exon number 2
gene id AMCG00006562
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9195436 ~ 9197467 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGCTTTTGTACTTGCCACTGAGAAGAAAGTGGATTGCCCCcagtcctgtgtgtgtgaaatcaGACCATGGTTCACTCCCAACTCTATTTATATGGAGGCCCCTACCATCGACTGTAATGATTTaggactttttattttacccGAGAGATTACCTGCCGACACACAGGTCATTTTGCTACAGACTAACAACATTGACAAAATTGAGAAACCCTTGGATTATCTGGTCAACATCAGTGAGATAGACTTATCTCAAAACAATTTATCCTCAATGAGTGATATCAATCTCGGACAGCTGCTTCAACTTTTGTCTCTGCACATGGAGGAAAACAAGCTACACACATTGCCTGACGACTGCCTGCACAAACTGACCAATCTGCAGGAACTATACATCAATCACAACCTGATCTCTGTTATCACTCCCGGAGCCTTCACGGGCCTACGCAATCTGCTCCGGCTCCATCTTAATTCAAACAGGTTGCAGATGATCAGCAGCAAGTGGTTTGAGGCCACTCCAGGACTAGAGATTCTGATGATTGGGGAAAATCCAATCATCAAAATCCAAGATATGAACTTTAAGCCGCTTATCAATCTCCGCAGCCTGGTCTTAGCGCGAATGAATCTCTCCGAATTACCTGACAATGCTTTAGTTGGCCTTGATAATTTAGAGAGCATCTCGTTCTATGACAACACGTTTGCTAAAGTCCCCCGTGCGGCTCTGCAGCAGGTCCAGAGCCTCAAGTTTTTGGATCTGAACAAGAACCCCATTCAGAGAATACAAAGAGGAGACTTCATGGATATGCTACACTTAAAGGAACTGGGGATAAATAACATGCCAGAACTGGTTTCTATCGATAGCTTTGGCCTTAATAATTTGCCCGAACTGACGAAAATAGAAGCAACCAACAACCCCAAGTTATCATACATCCATCCAAATGCTTTCTACAAACTACCCAGGCTAGAAACACTTATGCTCAACAGCAACGCCCTGAGTGCCCTATACCGGATTACAGTGGAATCTCTGCCCAACCTCAGAGAAGTCAGCATGCACAGTAATCCCATCCGCTGTGACTGTGTCATCCGCTggataaatatgaataaaactaACATTCGGTTTATGGAGCCAGATTCTTTGTTCTGTGTTGAACCGCCTGAGTACGAAGGCCAGCATGTTAGGCACGTGCACTTCAGAGAAATGATGGAAATATGCCTGCCGCTCATCTCACCGGAGAGTTTTCCTCctcacataaatacaaaaaacggGAGTTCTGTTTCGCTACACTGCCGTGCGTTTGCAGAGCCAGAGCCGAACATCTACTGGATCACACCTTCTGGGAACAAAATCTTGCCTAATACAGTTTCCGACAAGTACTACATGCACCCCGAAGGAACGTTTGATATCTATGACATTACGGAACACGAAGCTGGATTGTACACCTGCGTGGCTCACAATCTTGTCGGAGCTGACCTTAAAACCATTTTGGGATGCCTGCAGCCGTAG

Function

GO: NA

KEGG:

id description
K24492 LRRN1_2_3; leucine-rich repeat neuronal protein 1/2/3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138472 lncRNA downstream 181110 9010140 ~ 9014326 (-) True G110576
TU138400 lncRNA downstream 401374 8783905 ~ 8794062 (-) False G110520
TU138203 lncRNA downstream 1286208 7907558 ~ 7909228 (-) True G110369
TU138126 lncRNA downstream 1438584 7756625 ~ 7756852 (-) True G110309
TU138069 lncRNA downstream 1627277 7567888 ~ 7568159 (-) True G110271
TU138492 lncRNA upstream 279015 9476482 ~ 9477506 (-) True G110594
TU138511 lncRNA upstream 348028 9545495 ~ 9560104 (-) True G110605
TU138671 lncRNA upstream 1107464 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 1224094 10421561 ~ 10470060 (-) True G110733
TU138722 lncRNA upstream 1405628 10603095 ~ 10603733 (-) True G110757
AMCG00006559 mRNA downstream 283433 8887691 ~ 8912003 (-) True AMCG00006559
AMCG00006554 mRNA downstream 325914 8858345 ~ 8869522 (-) True AMCG00006554
AMCG00006553 mRNA downstream 338762 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006550 mRNA downstream 682814 8477343 ~ 8512622 (-) True AMCG00006550
AMCG00006549 mRNA downstream 770838 8419388 ~ 8424598 (-) True AMCG00006549
AMCG00006571 mRNA upstream 374022 9571489 ~ 9587506 (-) True AMCG00006571
AMCG00006570 mRNA upstream 391464 9588931 ~ 9592122 (-) True AMCG00006570
AMCG00006573 mRNA upstream 408071 9605538 ~ 9606425 (-) True AMCG00006573
AMCG00006572 mRNA upstream 426618 9624085 ~ 9625892 (-) True AMCG00006572
AMCG00006580 mRNA upstream 871555 10069022 ~ 10084834 (-) True AMCG00006580
TU138464 other downstream 196172 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 401374 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 471084 8722388 ~ 8724352 (-) True G110507
TU137983 other downstream 2106451 7078389 ~ 7088985 (-) True G110195
TU137903 other downstream 2409585 6785313 ~ 6785851 (-) True G110140
TU138509 other upstream 348028 9545495 ~ 9552080 (-) False G110605
TU138641 other upstream 889811 10087278 ~ 10107285 (-) True AMCG00006579
TU139024 other upstream 2820415 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 2939715 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 3678825 12876292 ~ 12878656 (-) False AMCG00006641

Expression Profile