RNA id: AMCG00006563


Basic Information

Item Value
RNA id AMCG00006563
length 2791
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00006563
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9479503 ~ 9484141 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAAAGGGAAGCCTGTCTCCAAACTAGCACgaaacaacaatatacaaaaacaggaaattTGCTCGGTGTCGGGGCCTGGGAAACCCATCCAGAGGTGCGGGATCTTGCTCCACAATGTCGAAGTATAAGCTGTTCCTGCTGAGGCACGGGGAGGGCGCCTGGAACAAAGAGAACCGGTTCTGCAGCTGGGTGGACCAGAAGCTCAGCACCGACGGTGTGAAGGAGGCGCAGGACTGCGGGAAGCTGCTGAGAGAGCAAGGATACGAGTTCGACTTGGTGTTCACCTCCATCCTCAGCCGCTCCATTCAGACGGCCTGGCTGGTGATGGAGGCCATGGGCCAGGAGTGGGTCCCGGTGCAGAAGTCCTGGAGGCTGAACGAGCGCCACTACGGGGCCCTGATCGGTCTGAACAGAGCCGAAATGGCCTTGAACCACGGGGAGGAGCAGGTGAAAGTCTGGAGGAGGAGCTACGGGGTCATGCCACCTCCCATTGACGAGTCCCATCCCTACTTCCACGAGATCTATAACGACCGTAGGTACAGTACCTGTGACGTGGCCAGGGAGGCGCTGCCCCGCACCGAGAGCTTGAAGGAAGTTCTGGAGAGATTGCTGCCCTACTGGAACGACGTGATCGTGCCAGAGATCCGGAAAGGCCGAAAAGTGCTGATATCGGCCCACGGAAACAGTTGCCGCGCTCTGCTGAAGCACCTTGAAGGAATCTCAGAAGAGGAAATTGCTAACGTTACTTTACCCACTGGGGTACCAGTTCTGCTCGAATTGGATGAAAACTTGCAGCCCACAAAACCTCGCCGGCTCCTGGGAGATCAGGCCAAGATTCAAGCAGCTATCAAGAAAGTGGAGGACCAGGGGAAGGTAAAACAACCTAGAACATAAGGGATGACGTAGTGAAAAGACTGGTCCggtgtgaaattaaatgtgttagtTACCTTTATTTGGATGTTGCACTTTTGTTGTTCTGTACCCTTCCATCTTACACCTTTGTCATTTTCAAGATAAAAGTTGTGATTGTGGCTGCCTTTCAAAGCAACTGATGACATTTTAGAGGGAGGGGATTGTTGGGTAGGTCATTACTTGAATGTTAGCTGAGTGCTGTAGACTgtaacatcatttttttttttagtttattttttctgatagcatttgttttggaaataagTTCAATGACAAAGGCCTGGATTAAACCAAAACTTCTGGCCACCTGCCTGAaggcgcatttacactgccattattttgttatttaaaatgcttttgttgcaacaaaatatgcaagtgcgttggttttactAGTTACAGCAATTCGTAAAGACATAGAATGCTTAATCTATagatataattaagtttggattTATGTGGTAGTGCGTATGCGAAGAACCCTGAAGTGGCTGACAgttgatctggatcaaatggcagtgtagacgCGACACcactgatccggatcaaatgttCTGATGCTCAGAAATGGCCACGTAGAAGCACCTAATAACAAACATTATTCTTTTGATTTTAATCTTGGCcattgtcatgtttttgttgttggagCCAAAACCATCTACTTTGTAAGTCCATAAATGTTATGTAGGAAGTGGAGCGCACTGTATTCTCAGAAACGAGTCTTAAAAAACGAAATAGAAATGTGGTCAGTATATGTTTTTGCATGTCAAGCGTGGTAGTCTACACTGTGTTAGGTCATATGTCGTACATGTCTTTACTTCCAAAGTGAAAATTGAAATTGTACAACACTAACAATATCTTGTACTATTGTACTATTGTACTATCACTGCAGGTCTGTCTTGTACTGCATTACAAAATTCAGGTCAAATTATTTATGAAATTGTACTTTCTTATCCTGACTGCAGGATTTTCTAATGTAATTCAagcaaatgttaaattattaaatgtcattTGTCTGTAAACCCATTTGTAATGACCTGAGGAGTAACATTAATCTGATGATTATCCCGCAGAGTACTGTAGTAAGAGAAAAGGTTTTACGGCAAGTCGACAACTAACTAGTTACTGTTAATCTGagtcttttaaattatttgttgtCTTCATTTGgtacattaattcatattttgtatccatCTGTCATACATACCAAATTTCCTAGCCTTTAGACTAAGTATACAAGTTCAATGTGTCAAGATATACAGGGATTGCTTTCTTGGCCTTTTTTCACATCATAAATGCTACTTTCTTTTCaatcagaaacattttttttcagaaaagaTTCTGACTTCAGTGCAAGTACTGTTATAAGTgagttttattaatgtaatgtattattgtcaCTAATGATGTTAAGTACCTGTGTTCATTTAGATTGTTAAATATCTGTGTTCACCACATGGGTTTTGgtatttgagatttttttttttttcactttctggagtataaaggaatgaaaaaatattattttaaataatatatatattgctgaatattgtattttttcttatgtGACATGCTCCACATCCTTAAAAATGTAGTTCTTGTTTTCACATTGAGTTGAAGGTTGaaagaattaaaaatgcaaaaatagtATTATATATTGGTGTTTAAAAGcaggtttatttaatataattatttagacAAACTGTTTGCaaaattgtttatgtattagaAGATTAActatatttttccagttttaataaTATCTTCTAACAAACACCAGTTCATACATATGgtcaggtccataaatatttggacagtgacacatttgtcatcattttgtctctgtacgccaccacaatggatttgaaaggaaac

Function

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004619 phosphoglycerate mutase activity molecular_function

KEGG:

id description
K01837 BPGM; bisphosphoglycerate/phosphoglycerate mutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138486 lncRNA upstream 22592 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 591011 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 684172 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 1299815 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 1300775 8178521 ~ 8178728 (+) True G110446
TU138618 lncRNA downstream 546285 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 885574 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 1636249 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 1865743 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 2187428 11671569 ~ 11672448 (+) True G110916
AMCG00006566 mRNA upstream 2675 9474800 ~ 9476828 (+) True AMCG00006566
AMCG00006560 mRNA upstream 420140 9036471 ~ 9059363 (+) True AMCG00006560
AMCG00006561 mRNA upstream 470263 8912280 ~ 9009240 (+) True AMCG00006561
AMCG00006557 mRNA upstream 593908 8874473 ~ 8885595 (+) True AMCG00006557
AMCG00006555 mRNA upstream 671644 8799742 ~ 8807859 (+) True AMCG00006555
AMCG00006564 mRNA downstream 46092 9530233 ~ 9560060 (+) True AMCG00006564
AMCG00006565 mRNA downstream 79811 9563952 ~ 9568276 (+) True AMCG00006565
AMCG00006568 mRNA downstream 108251 9592392 ~ 9595123 (+) True AMCG00006568
AMCG00006569 mRNA downstream 148642 9632783 ~ 9642065 (+) True AMCG00006569
AMCG00006567 mRNA downstream 169166 9653307 ~ 9656616 (+) True AMCG00006567
TU138383 other upstream 755437 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 1302717 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1824309 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 2567249 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2891104 6519865 ~ 6588399 (+) True AMCG00006501
TU138516 other downstream 82072 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 3527043 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 11453356 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 11564195 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 11658724 21142865 ~ 21203201 (+) True G112600

Expression Profile