RNA id: AMCG00006564


Basic Information

Item Value
RNA id AMCG00006564
length 4939
RNA type mRNA
GC content 0.42
exon number 23
gene id AMCG00006564
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9530233 ~ 9560060 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATGACTTTGAGCGCCGCCGAGAGCTTAGGAGGCAGAAGCGCGAAGAGATGCGTCTCGAGGTAGAAAGGCTGGCCAATTCGAGGAACGATGACGACGACGAGGAGGCCGCCCGGGAGCGCCGACGCAGGGCTCGCCAGGAACGTCTCCGTAATAAGGAGGATGACGAGTCCACGGGCCTGGGGACAGAGAAGGTGGAGCTCAACAACACAAACAGTGTGGTGGACGAGGAGCCGAAGAGCGTGTCCGTGATCCCACCGGCGGTGTCCGAGATCCCACCAGCGGCGTCCGAGGACGAGCAGGCTCTCTTGGAAAAACTGGCCAAGCGTGAGGAGCGTCGGCAGAGACGGCTGCAGGAGGCCCTGGACAGGCAGAAGGAGTTCGACCCCACTGTCTCCATGGACAACCACGAAGATGAGAAGACTGAGGGCCGCTACTGCCCACCAGCAcaggaggaggagcaggtggTGGTGAatgagaagaaggaggaggacaGGCCTTCTGAGTACAATGCCTATAAAGACAAAGAGGAGCAGAAGGTGGACGAGGAGAAGCCAGAAGAAGAGGAAGCTACCCAGGAGGAGGCCGTGCCTGAGGAGCCCCAGCaggaggtggtggtggagaaggaagaggaggcagTGGTAGAAAAGCCTAGGAGATCTCACTTTATGGAGCAGGAATATATGGAGGAAAAAATTAAAGAACCAAACATAACAGTGGAGatacAGGAGATACAGGAGATACCTAAAAGTTCCATAATGAAAGAAGAGGTGATTGAGGTGAAACCTAAAACATCGTACAGGGAAGAGgtgATCGAGGAGAAACCTAAAAGGCGTGTAAAGGAgGAGGTGATCGAGGAGAAACCTAAAACACTGTTTAGGGAAGAGgagGTGATAGAGGAGAAACCTAAAAGGCGTGTAAAGGAGGTGGTGGAGGAGAAGACCGTACCGAAGGAAGAGCCGGTAATACAGGAGAAACCCAAACCATGTTTCAAGAGAAAAGAGgTTATTGAGGAGAAGCCTAATCCGACCTTGGTGAAAGAAGAGGAGGCCAAACAAGAAAAGCCAAAAAGGACTTTCACGCGAGATGAGGTGACTGACAAAAAGGTGACTGAGAAAAAGATAACTAAGGAGCCAGAAGTGGGCCATCGTCACAAGCCAGCGCCTGCAGAACCGAAACAACAGAACGGAGAAGAATTCCACGTGGAGAAACACAAGAAACCGGAGAGGACCCCTAGCCGCGGCAATGTGAAGGCCAGCCCAGAAGCCGAGGAGCAGGACGCGGCCTCTCGCCAGGAGGCCGAGCGCaagctggaggagctgaagcGGCGGCGCGACGAGACGGAGAGCGGCGAGTTCGAGAAGCTCAGGCAGAAGCAGCAGGAGGCCGAGatggagctggaggagctgaagaggaagagggaagGGAGGAGGAAGGTGTTGGAGGAGGAGGGGCAGCGCAAGAAACAGGAGGAGGCAGAGAAGAAGGCCAGAGAGGAGGAGGAGAAGAGAAGGATGAAGGAAGAGATTGAGAAGAGGCGAGCAGAGGCAGCCGAGAAGAGGCAGAAGATCACAGAAGAGGCTCctgagggggaggggaagaAGCCATTTAAATGTGTCAGTCCACGGGGCTCGTCGCTGAAGATTGGAGAAAGGGCAGAGTTCCTGAACAAGTCAGCCCAGAAAAGTGGTGTTAAGGCATCACACACACCGATTGTGTCCAAGATTGACAATAAACTGGAGCAGTACACAACTGCTATTCAGAGCAACAAGGATCCAAAGCCACCGAAGCCGGGTACTGCAGACCTGCCCGTGGGGGATGTCCGCAACATCAAGAGCATGTGGGAGAAAGGGAACGTATTCGGCTCTCCTGGAACTGCAGGCGGGCCCAACAAGGAGGCAACTGGGCTGAAGTTTGGGGTTGCCAGTCGCATCAACGATTGGCTCAACAAAACTCCAGAAAGTGGCAAAGCAGCAGgaggaaaacctgctGACTTGAAGCCAGGCGATGTAACCAACAAGCGTAGCTTATGGGAAAACAAGGCCACATCCCCTGACAAGTCCAGCCCCGCTGCTAAGATGACAACAGGAGGCAAGAGTAAATCAGTTACCAATGGAATGGGACACTAACCTTACAAACAACTTGAGAAAGCTGGAACCAACAAAGTGCTAGACTATCCCGTTTgctatgtatattttaataccaaaaaaaaaagattttttttttgttttgttttgttatagcccgggaaaagaagaaaaaggaaaagcgATGTATATTAGCACTGTATTTAAAGCCCACGGTTTTATATGGTCATGTTTAAAGTATACTGCCTTTGCACAAGACCTTGTACTTTCTTTAGAAACTATGCTGTGAAATTTGAActtttatattgatataatttttaaaatgataattttatattaaaatgcagacaaaaatgGAAAGCGAATATATACTCGGCCTCTGATGCAGAATTGTGTAGTTGTTGTTGGTTGGGCTCGAACAAAAAAGGGCTGTACCAAATCCGCCATCTAGAAGAAATCGTGACTAGGCATTGTGTGTGTCGTGCTGACCTGTTTTCGCTATAAAAGGAAGATTCTGCATCACTCTTTTGCTGTCAAGATTAACCATCTTGTTTTAGTTAATGCATCAAGTTTATAATTCTAGCAAGGCTACATGCTAAAACTGGGTAAAATGTTAGGTAATAGCGGTACTGATTATAGTGATTGACTTAATAATGAATATCAGAATGACTGCAGTGGTTTTAGCACACATGCACTCATCGCTTTGAGATGTTTAGCTTAAGGACACTTTCTAACGGTAGTAGAATGCTCTAATATATGTTAGTACATATATTCagtaataaacatttacattatagcATATATCACAGCTTATTTGAGATTGTTCACACGTTTTTATACTCAAGACACCTACCAACCAATAGAAGCATTTAGAAGAataaaggaaacaggaagtgtttGAATCATGAAACTCACCTTTATAGCAGAATTGTACAACACCTTTTCCCCCACTGAGCTGGATATGGTGCAGTTTATCTTTGAGAACTTGATGTTCAGTTAACTTTTTTGGTTattctgcagagagagaaattggCAGTTTTCAATAGAAAAGTTGAAGCATTTGCAGCACTGCCCGTAAACAACTCTTATGCAACTGACAACTTTTCTTTCATGAAAGAAGCAAGTGACATGTGATGGCCATTGTGAATGCATGGAGTATGTGGTCTAGAGTGCCCCAAACATTAAAGTCCTAATCCTGACAAGGCACTGTTTACATGGTGCCCCTAGTCTTCAGACTAATTTTGTAATGCCTGTGACTGCATATATCTACTGGCATGAGACCATATACCATTTCCATAATATATAAATGGTCTAGAAACAGTATATAGCACTTGTTTTGACAATCTTAAACCATTCATTGACATTGAACAAGTATCGCACTAGGTAGTAACGGCCAATACACATCAAGATTACTACAGTATTCTAGCAGTGATACTATTAGTGTTAGAGCAAGCAAAGTCaggcttttgttttaatattacagtaacacacagtcCTTTTGCTTGGAatggaaaaatgctgtaaactaCAGTGTTCTGAAACTGAACTAAAGTTTTACAAGGCGATTTcctctattatatatataaatgttgctCTGAAAGAGGACATCTCAATAGTAATTTGTGCCATATCCAGacctgatatttttatttttcttgtgagggaacaaaaaaaaaaaaaaaacttgcatgttatataaattattaactttaattgttagGATATTCAGTATCCCGactatttaaaggaaaaaaaagtcttattGGTGTCACATTTAAAATCGAGACCTTAAACTTATAATGTGAGAAGGGAAATATAGAATGTGCTAGTGTTTCACATTGATAATGTCactatattattttaacctGACTGATGAGAATATTCTTTCTCACTGTATCATGAACAGCCCAGAAGATTAAAATACTGATTCAAATTCTAGGgatcaaaatattttgaaaaatactaCCGTCCGAAGGGGAAAATCTtcctaaattatgtttttgaaagttaataatgtgatattcaaatgtttaaacaaatacttttcgACTAAGATAATGCATAAAGCATTTATTGTGGATTAATATGGCTTCGGGGTACtaattaattatatgtttaaataaaataaatgttggtaATGCTTAATTTGAATTGGATACACTGTACTGTTTACATCATCTTCCAGAATTACacattaaactaaaaataaaaaatatctgaattgCATTCAACCCAAAGTATAACTATATGCATATATTCTTAattattgattgtttatttgctACAACTATTgctacaatgtatttttaaattttaccATAACTAGCATTATATGATTCTAGGGGAACAAGTAAAAATAACAGTACAGTTTGTCACATTTCTTGACgcatattatttttgtgagaGTTATTCTTATACATTgcaattttgcattttaatactaTGCTGCGTTTATGGCATGACTGTAAATGCTGGATAGCGACCAgttcaaattatgtattatcaAATATAACACTGCAGGTGGCACAGGAGTTGAACAATTCATCAAAGTTCACCCATGCCTGTGccagcaggaaaataaataaacgcatacatacattttgtattttattctattaagCAAAGAAGATCTAGCCCAAAGAAGTTCTTCGGAAGTGTTTAGAATgtcatttgaaattattgttctactttgtttttgtttttttttgtttacattttataaacgCACTCAACTATTGTATAGGGACAAAACTATGCAAATTGTCTTCACGTCGTCTGCCATTTTGTAAACACTATGGATATGTCTTTTGTAGTGTATAGcttcatacaaaaaaaatgtttaaactatGTA

Function

GO:

id name namespace
GO:0006936 muscle contraction biological_process
GO:0017022 myosin binding molecular_function
GO:0005516 calmodulin binding molecular_function
GO:0003779 actin binding molecular_function

KEGG:

id description
K12327 CALD1; caldesmon

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138486 lncRNA upstream 73322 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 641741 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 734902 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 1350545 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 1351505 8178521 ~ 8178728 (+) True G110446
TU138618 lncRNA downstream 470366 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 809655 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 1560330 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 1789824 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 2111509 11671569 ~ 11672448 (+) True G110916
AMCG00006563 mRNA upstream 46092 9479503 ~ 9484141 (+) True AMCG00006563
AMCG00006566 mRNA upstream 53405 9474800 ~ 9476828 (+) True AMCG00006566
AMCG00006560 mRNA upstream 470870 9036471 ~ 9059363 (+) True AMCG00006560
AMCG00006561 mRNA upstream 520993 8912280 ~ 9009240 (+) True AMCG00006561
AMCG00006557 mRNA upstream 644638 8874473 ~ 8885595 (+) True AMCG00006557
AMCG00006565 mRNA downstream 3892 9563952 ~ 9568276 (+) True AMCG00006565
AMCG00006568 mRNA downstream 32332 9592392 ~ 9595123 (+) True AMCG00006568
AMCG00006569 mRNA downstream 72723 9632783 ~ 9642065 (+) True AMCG00006569
AMCG00006567 mRNA downstream 93247 9653307 ~ 9656616 (+) True AMCG00006567
AMCG00006575 mRNA downstream 161479 9721539 ~ 9751895 (+) True AMCG00006575
TU138383 other upstream 806167 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 1353447 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1875039 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 2617979 6911876 ~ 6912254 (+) True G110163
TU137861 other upstream 2941834 6519865 ~ 6588399 (+) True AMCG00006501
TU138516 other downstream 6153 9566213 ~ 9567351 (+) False AMCG00006565
TU139270 other downstream 3451124 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 11377437 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 11488276 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 11582805 21142865 ~ 21203201 (+) True G112600

Expression Profile