RNA id: AMCG00006567


Basic Information

Item Value
RNA id AMCG00006567
length 471
RNA type mRNA
GC content 0.53
exon number 2
gene id AMCG00006567
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9653307 ~ 9656616 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGAGGTCTGCTGATAAACAACCCTACAGCTCTGGCCATTCTTGAATGCAAATGCCTGTGGCCAAACACGCCCGTGCAGTGTGTCGTGTCCCTGGGAACTGGCCGCTTCGAGAACGTGGGCAAGAACAATGCCACCTACACCAGCCTCCGAACCAAGCTGACCAATGTCATCAGCAGCGCCACTGACACAGAAGAGGTCCACATGATTCTCGATGCCCTCCTGCCTCCAGACACGTATTTCCGCATCAACCCTTTCATGAGTGAGGACATACCGCTGGACGAGAGCAGGAAGGAGAAGCTCAGCCAGTTACAGACGGAGGGAATTCGCTACCTCGAGAGGAACGAGGACAAACTGAAGAAAGCGGCCAAGATATTGCTGCAAGAGAAGTCGGCCCTTCAGAGAATGCAGGACTGGGTGAAATTAAAGGCAGACATGTATGGGGGTCTACCATTTTGTTCCAAGTTGTAG

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138486 lncRNA upstream 196396 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 764815 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 857976 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 1473619 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 1474579 8178521 ~ 8178728 (+) True G110446
TU138618 lncRNA downstream 373810 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 713099 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 1463774 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 1693268 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 2014953 11671569 ~ 11672448 (+) True G110916
AMCG00006569 mRNA upstream 11242 9632783 ~ 9642065 (+) True AMCG00006569
AMCG00006568 mRNA upstream 58184 9592392 ~ 9595123 (+) True AMCG00006568
AMCG00006565 mRNA upstream 85031 9563952 ~ 9568276 (+) True AMCG00006565
AMCG00006564 mRNA upstream 93247 9530233 ~ 9560060 (+) True AMCG00006564
AMCG00006563 mRNA upstream 169166 9479503 ~ 9484141 (+) True AMCG00006563
AMCG00006575 mRNA downstream 64923 9721539 ~ 9751895 (+) True AMCG00006575
AMCG00006574 mRNA downstream 149413 9806029 ~ 9839864 (+) True AMCG00006574
AMCG00006576 mRNA downstream 194034 9850650 ~ 9852328 (+) True AMCG00006576
AMCG00006577 mRNA downstream 311556 9968172 ~ 9984227 (+) True AMCG00006577
AMCG00006581 mRNA downstream 503377 10159993 ~ 10179843 (+) True AMCG00006581
TU138516 other upstream 85956 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 929241 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 1476521 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1998113 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 2741053 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 3354568 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 11280881 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 11391720 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 11486249 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 14375497 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile