RNA id: AMCG00006569


Basic Information

Item Value
RNA id AMCG00006569
length 1932
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00006569
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9632783 ~ 9642065 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTGTGAGCTTGGTTCTAGATGCCTATGTATTCCTCCTGAGCAGGACAGGTAACCTGTGGCTGAGCCAAGGTCAAAGGTCTTCCCAGTCCCCTGCTGTCCATTTCAGGATACCAAGAACACATCCAGCTACCAGACTCCATGTCAGAAGGTCACTCAGTTACAAAGCTGGGTATTTATACTTGAAGCAAAACTATTGCACAAAAACCAGGGGGCTGAAGGTATGGTCCAATAGAGGTGATTACCTTCGGCACAAGCTCAGTCTGTACGCCAACATTTCCCCATTCAGTACCTCATTATTGCGTAGATCAACAAGCTTGAGTCATCGCATGTCGCGAATCAAGAGCACATTGGACTCCGTCTCGAAAGCCGTCAGCGGAACCCACACTGAGCTCCTGTCGAAAATAGCCCGGCTCAAGCCCAATGCCGTGCAGGTGAGAAAAGAAGTCGAGTCCAACGTGCAAACTCAGTGTGAAGCTTCAGGAAGAGAGACGTCCGCTGCTGCAACTGTCCAACCGGCTGAGCTCGAAGAGAAGAAGAAACCTGAGGAGAAGAACCTGGACAACAACAGAAAATCCCCATCTGTGTTGACTAAACCTGCTCCGAACACATCCAGAAACACTGCAGTTACTAAACAGACTGTCACAGAACTTTTCCATCCGAGCAACTTCGCCACTAATTTCGGTGAAACATATAATTTTGTATCTAACCACATTAATGATTATTTCacaggagaaacaaaaatgattaacaAAGACAGCAACTCCAAAGCCTCATTGAAACCCCTTCCCGGTGCAGCGGACCAGACTCCTGTCCTTGTCGCACAAGCAGACAGTGAAAGGTCTGACCCACCTGCTGCTTCCCCCAATTCCCCAAAAAAGGGAATTGCCCATTACCTGTCCTACCCAGGCAATAGCGTTCAAGCATTCGTTGGCTACCTGGTCCCTTTGGTGCCCAAATTTCGCCACGAATCCAAAGCGATTGCAGAAGAGAAAGCCAAAGCTCCGGCCATGATAGAAGCAAGCACAAAGAAAGGAGACGGTGAGAATGGTACAGATCAGAAGACTGTGGAGGAGAAAGCCAAGCGACTTCTGCTTCAGAGGGAAAAGATTATTGCGAGAGTTAGTGTGGACAACAGAACAAGAGCATTGGTCCAAGCCCTGCAGAGAGCGTCCGATGTCAAGATCTACATCCACAGGGTGGAGGAGTTGAGCTACCACCTGCTGGAGTTCCCAGAGACCAGAGGAGTAGCAGTGAAGGAGAATATTATCCCGTGCTTGCTGCGTCTCAGACAGGCCAGTGATGAGACCCTGCAGGCGGCCGTGAGGGAGGTGCTGGCCCTGGTGGGCTACACTGACCCTGTCAAAGGCAGGGGCATCAGAGTCCTTTCCATCGATGGGGGAGGAACCAGGGGACTTGTTGCTCTTCAGACCCTTTATAAATTGGAAGCGCTGACTGGGAAACCGATTTACCAGTTGTTTGATTACATCTGTGGTGTCAGTACAGGGGCCATATTAGCCTTCATGCTGGGCGTCTTCCAGATCCCGTTGGATGAGTGCGAGGAGCTCTACAAAAGGCTTGGCACCGATGTCTTCAAGCAGAACGTCATCTTGGGAACCGTGAAGATGGGGTGGAGCCATGCTTTCTATGATAGTGAGATGTGGGAAACAATACTCAAagagagaatgggaTCAGACCTGATGATCGAGACCTCAAGAAACGCTAAATGCCCAAAGGTGTCAGCAGTGAGCACAATTGTGAACAGGGGGACACCTTTGAAGGCCTATGTCTTCAGGAACTACAACATGCTCCCCGGGATGAAGTCTCACTACTTGGGAGGTTGTCAGCACAAGCTGTGGCAGGCCATCCGCGCCTCATCTGCGGCACCAGGATACTTCCAGGAGTTCGTACTAGGAAATGACCTCCATCAG

Function

GO: NA

KEGG:

id description
K16815 PNPLA8; calcium-independent phospholipase A2-gamma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138486 lncRNA upstream 175872 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 744291 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 837452 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 1453095 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 1454055 8178521 ~ 8178728 (+) True G110446
TU138618 lncRNA downstream 388361 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 727650 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 1478325 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 1707819 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 2029504 11671569 ~ 11672448 (+) True G110916
AMCG00006568 mRNA upstream 37660 9592392 ~ 9595123 (+) True AMCG00006568
AMCG00006565 mRNA upstream 64507 9563952 ~ 9568276 (+) True AMCG00006565
AMCG00006564 mRNA upstream 72723 9530233 ~ 9560060 (+) True AMCG00006564
AMCG00006563 mRNA upstream 148642 9479503 ~ 9484141 (+) True AMCG00006563
AMCG00006566 mRNA upstream 155955 9474800 ~ 9476828 (+) True AMCG00006566
AMCG00006567 mRNA downstream 11242 9653307 ~ 9656616 (+) True AMCG00006567
AMCG00006575 mRNA downstream 79474 9721539 ~ 9751895 (+) True AMCG00006575
AMCG00006574 mRNA downstream 163964 9806029 ~ 9839864 (+) True AMCG00006574
AMCG00006576 mRNA downstream 208585 9850650 ~ 9852328 (+) True AMCG00006576
AMCG00006577 mRNA downstream 326107 9968172 ~ 9984227 (+) True AMCG00006577
TU138516 other upstream 65432 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 908717 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 1455997 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 1977589 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 2720529 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 3369119 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 11295432 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 11406271 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 11500800 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 14390048 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile