RNA id: AMCG00006570


Basic Information

Item Value
RNA id AMCG00006570
length 2288
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00006570
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9588931 ~ 9592122 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCCACCAGGTATACTGCGCGGGGGATGTGCGTCTTGTCACGTTTTGTGGTTGTTACTGCCTCCTTGCGCAGTGCGAGTCTGCTGATGTTTTGTTCCTGCCGGGCAGCAGCCAAGTTaggctgataaaaaaaaagcactgtaTTGAAATTGTTACAGATATTAAAATCAACCAGACTGCACTTAAAGACGCAGAAAAGCTGAAGTCGTATTCATATTTTCTCTCGCATTCCGCCCGGGCTGTGTCCGATGCAGTCCGAGCTTCATCTCTCCAGGGTAATTAGCAACATGGCAACTGCCCAATCAGCGTTAACATTTGCCGTCTGGATTTTAATGATTTCTGAACTAATCCTGGCCAAAAAGGACTACTATGACATCCTCGGGGTGCCAAAAGACGCCTCTGAGCGCCAGATTAAGAAGGCCTTTCACAAACTTGCCATGAAGTACCACCCAGACAGGAATAAGAGCCCGAATGCTGAGGTGAAGTTCAGAGAAATTGCAGAAGCATACGAGACGCTCTCAGACGAGAAAAGAAGGCGACAGTATGATCAGATCAGATTTGGGTCTTTCCCCAACGACGGTACAGGTGGCAGACGCGGACCACAGTTTGAGCAGccctttaactttaactttGATGACATGGACTTTGACATCTTTGGGCAGAATCACCACAGTCATCATAAGAAGCACTTTGAGAACCACTTCCGGGCGCAGCAGGAAGCCCACAAGAGAGCCTTCCAGGACATGCCCTTCAACAGGGGGCTGTTCGACGACATGTTTGAAGACATGGAGAAGATGTTTACGTTCAGCGGGTTTGACGGCACGCGCAGGCACACGGTGAGGACTGAGAGCAGGTTCCAGGGCTCGGCCAAGCAGCAGTGCAGGACTGTCACGCAGCGCAGGGGCAACATGGTCACCACTTACACAGACTGCTCCGGCTCCTGAGACCGGAATGGAGGCGCAATACGAACGATTTGATCTCCAGCCTGGTTGTTCGATTGTTAACAttcatcttgtttttttgttttttaatgaataagcttaatttaacaatttacagCTGTGACATGACTGAAGTCCTTCATCTTTGGGTGGGTAGATTTGATATAGATAGTGTTAAACCGgacaataattattttcacaataaaacgCATAGAAGATGCTGaaagattagatttttttttttatatgcagcaaatgcaataaaaatgatTCTGCTTACAAGCAATAAATGTCAGATATAGTTCCCTCACTTACCTTTTGGAATTCCAGTCAAGGCTAATGCATATACCTCCAAGACTTGAGGGTCCAACACATATGATTGTGTAGCCTTTTTGAAATGAACATGTAGTTTAACTGCTGGTGTTCAAACATAACATGACCCGTGtaaatttgattgattttatccAAAAAGCTGCAATCCAATTTATGTTGTGCTACATCACAATTAACCTATTGTGCAAACATTGAGTATTCTATTGTCTAAAACTGTCTACTAATTACAATTTCAagctgttttgaaatgtaaaaatattttgtgatgATTGATTGCCCTAGACATCTTGCTGTCTTTGTGTTGACTTAGCAGGATAATATAGAGATTTGTATTTCCTGCCTTAGGGATTATTCAAAGGTTAATTAGGCAGGGATACAATTAACATGCATCTGAAAGATTAGACTGTGGACTTCTCATTTTGCTGAAATGTGTGGCTCTTCCATACCAGTTCATACTCAGGAATGCTTGCATTATATAGTGTAAGAGTTTTAGAATTTtggttcagttttatttatgtatagatATATGTTTTCCTGTTAACTCTTAAATAGCAGCTGATTATTGACTTGGTCCCTTTTTCAAGATTAGTGTCTCATCATGTTAGATATTGCAggaaataatatttgaaaattgTTACTTTTCAACATCTTTGGGAAAGGGAGAGTATTTGCACTCCGAATGGCATATTGTAATATTGCTGTTGTTAACCCTGACTTACAAAGCTATTCGAATGAAGAGAGACCATCTGTAATCACCTGGTGTTTAACATACATTAACATATAGACTCTGTTACCTCATACCCTTTTTGTAGACCTATCTTTGATCTACAGTATCTAATGTGCAATATGTCTAGCCAGCTTTTCGTCTCTGTACttatttttgtctgcttttgCTTGTGTTACTGCTGGCTTTATAGTAACGTGGAATTGATGTACAGCTGAAATGTCTTgcactttcattattttaatcctATGGAtgaaatttacatttaacagaCCTTGACAGTTGTAGAT

Function

GO: NA

KEGG:

id description
K09515 DNAJB9; DnaJ homolog subfamily B member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138511 lncRNA downstream 28827 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 111425 9476482 ~ 9477506 (-) True G110594
TU138472 lncRNA downstream 574605 9010140 ~ 9014326 (-) True G110576
TU138400 lncRNA downstream 794869 8783905 ~ 8794062 (-) False G110520
TU138203 lncRNA downstream 1679703 7907558 ~ 7909228 (-) True G110369
TU138671 lncRNA upstream 712809 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 829439 10421561 ~ 10470060 (-) True G110733
TU138722 lncRNA upstream 1010973 10603095 ~ 10603733 (-) True G110757
TU138921 lncRNA upstream 2079447 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 2196818 11788940 ~ 11789234 (-) True G110939
AMCG00006571 mRNA downstream 1425 9571489 ~ 9587506 (-) True AMCG00006571
AMCG00006562 mRNA downstream 391464 9195436 ~ 9197467 (-) True AMCG00006562
AMCG00006559 mRNA downstream 676928 8887691 ~ 8912003 (-) True AMCG00006559
AMCG00006554 mRNA downstream 719409 8858345 ~ 8869522 (-) True AMCG00006554
AMCG00006553 mRNA downstream 732257 8851743 ~ 8856674 (-) True AMCG00006553
AMCG00006573 mRNA upstream 13416 9605538 ~ 9606425 (-) True AMCG00006573
AMCG00006572 mRNA upstream 31963 9624085 ~ 9625892 (-) True AMCG00006572
AMCG00006580 mRNA upstream 476900 10069022 ~ 10084834 (-) True AMCG00006580
AMCG00006579 mRNA upstream 495153 10087275 ~ 10089638 (-) False AMCG00006579
AMCG00006578 mRNA upstream 518339 10110461 ~ 10115803 (-) True AMCG00006578
TU138509 other downstream 36851 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 589667 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 794869 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 864579 8722388 ~ 8724352 (-) True G110507
TU137983 other downstream 2499946 7078389 ~ 7088985 (-) True G110195
TU138641 other upstream 495156 10087278 ~ 10107285 (-) True AMCG00006579
TU139024 other upstream 2425760 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 2545060 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 3284170 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 3284170 12876292 ~ 12878656 (-) True AMCG00006641

Expression Profile