RNA id: AMCG00006576



Basic Information


Item Value
RNA id AMCG00006576
length 963
RNA type mRNA
GC content 0.62
exon number 3
gene id AMCG00006576
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 9850650 ~ 9852328 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGCTTTGACTTGGACCGTTTCGTGGGCTCCGTGGACCCGGACCTGAAGTGCAGCCTGTGCTGTAAGGTGCTGGAGGAGCCCATGTCCACGCCGTGCGGACACGTCTTCTGTGCCGCTTGCCTGCTGCCCTGGGCTGTCCAACACAGGCTGTGCCCGCTGCAGTGCCGCCCCATCTCCACCAGGGACCTCCACCAGGTGCTGCCCCTGAAGAGCCTCATCCAGAAGCTGCAGATACGCTGCGACCACCGGGCCGAGGGCTGCCCCCAGACCGTCCCGGTGCAGGAGCTGGCGGCTCACTCACAGGGGTGCGACTACAGCCCGGCTCGGTGCGGCAATGAGGGCTGCCCTGAAGTGGTGCGACTGAAGGACATGGACGCCCACATGCGGGACAGCTGTGCGCACAGGCCGGTGGGGAAGTGTCCGCAGGGCTGCGGGCTGCTTCTGCTGCACAAGGACGTGGTGCAGGACAGCCACTGCTGCCTGGAGGCCCTGCGAGCGCACAGCGGCGCCCTGGAGCAGGAGGCCAGGACCCAGCGGCTCCGGTGGGGCAACCGAGAGAGGGCGCTGCTGGCCCAGGTGGCAGCCCTGCAGAGCGAGGTCCAGCTCACTGCCCTGAGGTACCAGAAGAGGTTTCACCAGTACATGATGCACATCAACACCATCACCAAACACATGACTGGGCAGTGCAAGGGAGGAGAGCATCAGCAGCTGAGTATagccctgcagagagagagtgacactCTAGGATTCAATATCATCGGAGGGACGCTCAGTCAGGAGGACGCAACACCTGAAGGGATTTATGTGTCTAAAATTGTAGAGAAGGGTCCTGCTGACGGGGCGGGTGGACTGCGACTGCACGACCGAATCATAGAGGTAGGGCACGACTGCACCCCCGCATTCACACAACTCTGCTCTTTGTATACAGAGGACCCACGTGTGTTTGAACTCCATTACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138486 lncRNA upstream 393739 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 962158 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 1055319 8795060 ~ 8795331 (+) True G110523
TU138306 lncRNA upstream 1670962 8179441 ~ 8179688 (+) True G110447
TU138305 lncRNA upstream 1671922 8178521 ~ 8178728 (+) True G110446
TU138618 lncRNA downstream 178098 10030426 ~ 10031846 (+) True G110681
TU138673 lncRNA downstream 517387 10369715 ~ 10369931 (+) True G110722
TU138835 lncRNA downstream 1268062 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 1497556 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 1819241 11671569 ~ 11672448 (+) True G110916
AMCG00006574 mRNA upstream 10786 9806029 ~ 9839864 (+) True AMCG00006574
AMCG00006575 mRNA upstream 98755 9721539 ~ 9751895 (+) True AMCG00006575
AMCG00006567 mRNA upstream 194034 9653307 ~ 9656616 (+) True AMCG00006567
AMCG00006569 mRNA upstream 208585 9632783 ~ 9642065 (+) True AMCG00006569
AMCG00006568 mRNA upstream 255527 9592392 ~ 9595123 (+) True AMCG00006568
AMCG00006577 mRNA downstream 115844 9968172 ~ 9984227 (+) True AMCG00006577
AMCG00006581 mRNA downstream 307665 10159993 ~ 10179843 (+) True AMCG00006581
AMCG00006590 mRNA downstream 659844 10512172 ~ 10518858 (+) True AMCG00006590
AMCG00006589 mRNA downstream 740969 10593297 ~ 10617772 (+) True AMCG00006589
AMCG00006596 mRNA downstream 908840 10761168 ~ 10763850 (+) True AMCG00006596
TU138516 other upstream 283299 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 1126584 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 1673864 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 2195456 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 2938396 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 3158856 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 11085169 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 11196008 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 11290537 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 14179785 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile