RNA id: AMCG00006578


Basic Information

Item Value
RNA id AMCG00006578
length 3037
RNA type mRNA
GC content 0.36
exon number 6
gene id AMCG00006578
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10110461 ~ 10115803 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGTTGTATTTTGCAGAGCTGGGATATGTAAAGTAACAAACGCAGACGACAACATGAGCGGTGGTTTGGCACCAAGTAAAAGTACTGTTTATGTCTCCAACTTGCCATTCTCTCTGACTAATAACGACTTGCATAAGatttttacCAAGTATGGAAAAGTTGTCAAAGTGACTATAGTGAAAGACAAGGACACCAGGAAGAGCAAAGGCGTGGCTTTTGTACTTTTCCTTGACAAGGAATCTGCACAGAACTGTTCCAGAGCTCTCCATAATAAGCAATTGTTTGGCAGAACTGTGAAAGCCAGTATTGCTATTGACAATGGGCGAGCATCCGAATTCATCAGGAGGCGCAATTATACAGACAAGACAAGGTGCTATGAATGTGGTGACTCTGGTCACTTAAGTTATGCCTGCCCAAAAAATTTGCTTGGTGAAAGAGAACctccaaaaaagaaagaaaagaagaagaagaagaaatcagaAGAACCAGAAGAACAAGCAAAACTCGAGGAAGAGGAAGTTAGGCGCAAACAAAGTGCAGAGAGTGCAAACCAGGCTTCTACATCTGATGAGTCCAGACGTCCAAGGATTAAAAAGAGTGCATATTTTAGTGATGAAGAAGAGCTAAGTGACTGAGagctatacattttttattatataaagtgTCCAGCTCCtgaagaaattatttatttacagtttgttgacatttttatctgagaggattttttttaggtgtatgatttttgtttattctatttGAAGAATCTGTCGGAATATCTTTGTGGCAAATAATTAGAGTTGATAATTTATCAGCAGCTCTATCTCATCAGACAGGTTCCTTCCCTACAAGTTATTTCCACATACAATTTCTGCCTATGTAATCTatatacacagtttattttttgaaaaggtcacactttaattttaatctgtgctttttcttgaaatgtttattttatccaGTCAAATATCAAATGGAAGGATACCTATTACAAGTCAAATGTATCTTTCTCAGTTCAAAAGCGGTGGCGCATTAATAAACCATGCTTTATGCATTTGCTatgcaaaatgtacttttatctGTCGATCACTGTTTTTCCATAAAATAGTATAACTATTTTCCCCCGAATCTGATGctagaaaaaacattttcttgtgttttttttaaataaagtgctttgaaGGGAAAAGTAAAACTGAACCATAATCATCATCGTCGTCAGTATTGATTGATATGATATGCTCTCAGTGGAAAATATTTCTCACTGCTTTTAATGTGTAATGTTAGTGTAGAGGAGTGAGCAACCCTTGGGTACCAGATAAGAGGTTTGcgctgattgttttattttttattttgttctttctgaTTTTATATTACCTGCATTGCATCATTTATAACACCCAGTGATATATTAGATAacctgaattatttttaaaaagtaccttttttgaaattgaatgttTAGTGTTAAttgggtgtgtgttttttaagaatataatatTTCTAACTCTGGTTTACTGGTTGTTCAGTGCTCATTGATTGACTGGTGGTATAATCTACAGTTCCCTGTATGTGTCCATGTCCCTGTTCTATAAAATCTCAAGGTACAGGCTCATCTCTCAGTTGTCTTTTGGATCACCAATTGAATTATAGACCACTGTGCTCACTGTGCCGTGCAGAATTCAAGCGATTAAGGGCACCACAAAGGTGGTTCaaagctgttgttgttttctttcattgaaTGCTTGATGGTTAAGTATGCAATATTGATTTCCAGAATATAttaagagatgttttttttacactatGAATAACTAATGTTGTGATTGtgactttaaaaatgtctaaatgtaAATTACTGCAGCATAGTTCAGTCTTCATTTGTAGCATCAGATGAAgtgaaaaataactgaaatccAGGATcttcattaatgttttaatttgacataCCTGTGTTCTTATTGTGTTgattctttgttattttttactgcTAAGgttaatatgtattatactGAAAAACTATTCTTTAACATATGAGAGGGTTACTCCCAGATTATCTGCTTCTAAACCCATTTCAAACTGCTTTGGGATGGAATTTGGCAAATGCAACTCAAAACCTTTCGGATGCTTCCTTGGACTGCATGGAGCTGAATTGAAATAACCTTTACTGTACTGACTGAGTTTATGCTTCATGCTTCTATATACAATATGTGGGAGCATAAGAGGTTGGAAACTTAAAGATACAGTATGGAAATATTACATAGATTTTactgcatatatataatattaaatcagTTCAGAAGTatggaaagatgcatgcttggaataacaaggaaaacaaataaatggatctgagaacaaacaaaagtatgatGCATCATtggaagaatgaaaatgttaaaatggcaatgggccggacacacaagaagaacagaccaatgCAATAGCTATACAATTGATCCCGAGAGATGAAAAAAGAGCTagaaaacaaccaaataaaagaggggaagatgaaatcagaagctttgctggcatgacctggaaaagacatcaaaacaagtggaaacctcttggggaggccttcatgcagcagtggattgataaaggcGGTTGctgttaatatgtatatatgtactgtaaGAGAACAATAATAGATTTGCCATTTCACtgcaatttttaaaaaatgttttgtattaactgtacaTATATAGGGGGAGGGGGCATagcaaaatatgaaatggaGCTGTGAAGTATTACATTATCTCAAGCCAAACAGAGACCTATAATCCCCAAATCTCAGTTTTCATAAAGTTGGATGAAAGCACTACCCCTGTAATGTTTATTGCCACGCTATGGAAAGAATGCATTTGCCGTGACAGATTGGGTGATCCAGATGATCGATTTCCAGAACATTCACTCTGAATCTCTGCAAGGCCTCCAGCAGAGTCCCTACCTCCCGTTGACAAGCCAAACATCTAGGTTCTCCAGTTcggtgttcttttttttaacctgcaaGTACATGGAGACCATTTCCAAA

Function

GO:

id name namespace
GO:0006396 RNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K13154 ZCRB1; U11/U12 small nuclear ribonucleoprotein 31 kDa protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138511 lncRNA downstream 550357 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 632955 9476482 ~ 9477506 (-) True G110594
TU138472 lncRNA downstream 1096135 9010140 ~ 9014326 (-) True G110576
TU138400 lncRNA downstream 1316399 8783905 ~ 8794062 (-) False G110520
TU138203 lncRNA downstream 2201233 7907558 ~ 7909228 (-) True G110369
TU138671 lncRNA upstream 189128 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 305758 10421561 ~ 10470060 (-) True G110733
TU138722 lncRNA upstream 487292 10603095 ~ 10603733 (-) True G110757
TU138921 lncRNA upstream 1555766 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 1673137 11788940 ~ 11789234 (-) True G110939
AMCG00006579 mRNA downstream 20823 10087275 ~ 10089638 (-) False AMCG00006579
AMCG00006580 mRNA downstream 25627 10069022 ~ 10084834 (-) True AMCG00006580
AMCG00006572 mRNA downstream 484569 9624085 ~ 9625892 (-) True AMCG00006572
AMCG00006573 mRNA downstream 504036 9605538 ~ 9606425 (-) True AMCG00006573
AMCG00006570 mRNA downstream 518339 9588931 ~ 9592122 (-) True AMCG00006570
AMCG00006582 mRNA upstream 66374 10182177 ~ 10198686 (-) True AMCG00006582
AMCG00006584 mRNA upstream 260131 10375934 ~ 10385675 (-) True AMCG00006584
AMCG00006583 mRNA upstream 287771 10403574 ~ 10422520 (-) True AMCG00006583
AMCG00006585 mRNA upstream 328422 10444225 ~ 10467706 (-) True AMCG00006585
AMCG00006586 mRNA upstream 390248 10506051 ~ 10511361 (-) True AMCG00006586
TU138641 other downstream 3176 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 558381 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1111197 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1316399 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 1386109 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1902079 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 2021379 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2760489 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2760489 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 3339629 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile