RNA id: TU138641


Basic Information

Item Value
RNA id TU138641
length 2935
RNA type TUCP
GC content 0.43
exon number 3
gene id AMCG00006579
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10087275 ~ 10107285 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTGGTGGGGCAGGGGGGGGGAGCAGCTGACCCAGACAGCTCCAAAACTGCACGCCCAGACTCAGTCACTGTGAGCAGGGGGAAGTGGCAGGCATGCATATCCAGTAAGGGCTCAGTTACAGGGAGGGTGCATCTGTGCATGGTGGACAGTGCATAATACaggaaggggaggaggaggaggggggacaCACAACAACAATGTCTGTCCCCTCCATCATATGCAAACCTGCCGCCTTCAGCTTCGTGTTTCTTTCAGGAAATCGCCTGCCGGCTGATTggccacccccccaccacgTGACCCTGCGACTGGAGTTTCCACGCCAGCTGGAAGCGCTGTGATCCGGGCGCCGCGGTCATCTCTACCCGCTCCTCCGTCCGCCGCTCCGTAGAAACAGACCCGCTCTGCGCACCATGGGAGACAAAAAGAGCCCGACCAGGTAACGCACGACCCCGACGCGTAAGAGACAGGGATGCGCCGGGGATGCGGTGGGTGTGAATAATTGAAGCGAGcgagcgagtgtgtgtgtgtgtgtgtgtgtctgtgagtgagtgagtgagtgagtgagtgtgtgtgtgtgtatgtatatgtgtgtgtgtgtgtgagtgagtgagtgaggtgGCCGCTAGTGTAGCAACCATGGCGGACGGGCTGTTTCATTGCAGCGTCGGCGCGGATATCTCGTCAGTCTGACCGCTCTCGGGTCACGGCGGGCTCCGGcacctttttgtgtgtgtgtgtgtgtctgggaagTGGGCCGAGCGGATGCCCCCCGTGTGCCGGCGTGGCGACagtacagggggaaaaaaaagtggtgttgtgtttttgttgtcgtttttgAAGGCCGAAGCGGCAGCCCAAGCCTTCCTCCGACGAGGGATACTGGGACTGCAGCGTGTGCACGTTCAGGAACAGCGCCGAGGCTTTCAAGTGCATGATGTGCGATGTCAGGAAGGGGACCTCGACACGGAAACCTCGTCCAGTTTCCCAGTTGGTTGCACAGCAAGTAACCCAGCAGTTTGCTTCCCCAACACAaccaaagaaagagaaaaaagataaaacagaaaaagaaaaaaatgaaaaggaaaccaCACTCAAAAAGAACAGTCACAAGAAAATGAGGCCAAGATTAAAAAACGTGGACAGGAGCAGCGCCCAACACTTGGAAGTCACAGTAGGAGACCTGACTGTTATTATCACAGACTTTAAGGAGAAAGCAAAGTCAACACCAACTTCCAGCGCTACATCTGCCGACCAGCACAGTCAAAGCGGCTCTAGTTCCGACAACACTGAAAGAGGGATCTCCCGGTCGTCCTCGCCGCGGGGAGAAGGATCGTCAGTGAATGGAGAATCCCACTAAAACCTCGCGCCCCGGTCCCTGCCCCCAGCCCCCTGCTTCCCCGTCCCTGAGATTTATTTAGTctgttttgaacatgcaaatGTTGTAAAACCTACACCAAGATATACAAGTCCAGATTTCAGCCAGGATACACCACATTTTCATGGCATACAGACATGGTGGTTTACATTGTGGAAGCCTTCCAGAATGTTCTCGGCACTGATCGGTAGATTGTCCTCAAAGAGATGTGGAACATTGAGTGCACTTTTAAAGTAAATACTGTAATGTTACTTCACCCTTGCTGCTTATtcagtgaaaaatgaaaatctgtccCATGTTCCCAAAACGTACAGACTTTTCCAGGTCCATGTAAATGTGGTAGTATTTTACATCGAATCAGTGTTACATTGTCAATATACACttaatttcattcatttctttccctttccaCCGTGGACTCTATATTGTGGCATGAATTGGGTAAAAGTTTTAAGGAAGTATTTCAGATTTGCCGAATATGCATTACAGGAGAAAATGTGAAGCAGCTATCTGTAAGTGTACAGTGACATTGATCAATCAAATTAACTGTAATAGCAAGagcttttttttctcagtgGCTTAATGCACCTGCTGGTACTTGGTGTGGTATAATGGGAAattgttctttaaaaacagaaaagagaaaaaaaaaaaaaaaaactttaaaacacatttgtatacaGTTTTGCCAACGTTTTACAGCACATGTTATTCTAATAGATCATATCACTGTTATGTTGCTGGTTTTACCAAACTGTGCTGTTATATGTATATGAACATCTCagttaattacattgttttactgTCAGAACAAAAATTTATAAGTAAAAGAATGAAATGATGAATTAATTGTTTAGAGATTGATCTATCTTGATCTGCTtctcattcattttatattatagatGCTAGCTTGTCATTATTTACAGTGGTTTATATTATAGACatgatcacaaaataaaattaaaattatagactccTTAGTAAAATGCATCCTAAATATGGAGTTATTACGGTGtctactttattttttccatggtTGGTTAAAATTGGGAGTGAAGCACTAACAGATTTGGGAGGGTGGTCAAGGTCTTCATTATTCAGTGTGTTTACAAAGCAAAGCAAGTTGCTGCATTGATAGGAATGTATTAAATGCTGTCATGTTACTTTtgtgaaacaatttaaaaagacttgTGAGTACTGAATAGAAACTAATGATTTATATTCTAGTTTCAGTTTAATAATGATTCATTTGGATATTTAGGTATATTGCAATTTAAGTGACTGTTATTGAGGGCAATGATGAAatggaagatttatttttctcaaagcTGAAGAAAACTTTAAGGTATCATTAAcctgtatattattttcaagTAACATGACTTAAATTAACAAGTAGTGGTCAGCAGAGGTGGAGTGAAATAAATAGTGCTCAGACATTACTATTGCAAAcctaaaagaataaaataaaaaataaaaaacttattTCATAAGTATCTATTTAAatgaggaataaaataaatgataatggaatgtgattaaaaaataataaaaaaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138511 lncRNA downstream 527174 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 609772 9476482 ~ 9477506 (-) True G110594
TU138472 lncRNA downstream 1072952 9010140 ~ 9014326 (-) True G110576
TU138400 lncRNA downstream 1293216 8783905 ~ 8794062 (-) False G110520
TU138203 lncRNA downstream 2178050 7907558 ~ 7909228 (-) True G110369
TU138671 lncRNA upstream 197646 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 314276 10421561 ~ 10470060 (-) True G110733
TU138722 lncRNA upstream 495810 10603095 ~ 10603733 (-) True G110757
TU138921 lncRNA upstream 1564284 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 1681655 11788940 ~ 11789234 (-) True G110939
AMCG00006580 mRNA downstream 2444 10069022 ~ 10084834 (-) True AMCG00006580
AMCG00006572 mRNA downstream 461386 9624085 ~ 9625892 (-) True AMCG00006572
AMCG00006573 mRNA downstream 480853 9605538 ~ 9606425 (-) True AMCG00006573
AMCG00006570 mRNA downstream 495156 9588931 ~ 9592122 (-) True AMCG00006570
AMCG00006571 mRNA downstream 499772 9571489 ~ 9587506 (-) True AMCG00006571
AMCG00006578 mRNA upstream 3176 10110461 ~ 10115803 (-) True AMCG00006578
AMCG00006582 mRNA upstream 74892 10182177 ~ 10198686 (-) True AMCG00006582
AMCG00006584 mRNA upstream 268649 10375934 ~ 10385675 (-) True AMCG00006584
AMCG00006583 mRNA upstream 296289 10403574 ~ 10422520 (-) True AMCG00006583
AMCG00006585 mRNA upstream 336940 10444225 ~ 10467706 (-) True AMCG00006585
TU138509 other downstream 535198 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1088014 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1293216 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 1362926 8722388 ~ 8724352 (-) True G110507
TU137983 other downstream 2998293 7078389 ~ 7088985 (-) True G110195
TU139024 other upstream 1910597 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 2029897 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2769007 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2769007 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 3348147 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile