RNA id: AMCG00006580


Basic Information

Item Value
RNA id AMCG00006580
length 3724
RNA type mRNA
GC content 0.43
exon number 7
gene id AMCG00006580
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10069022 ~ 10084834 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTTAACAAGTAGGAAGATGCAATATGCatgcatgaataataatacaaataccatCAACGAACACATTTCtgcacagattattttttaatatgtacacGTCCCCAACATAACTGTAGGagtaagaaacacacaaaccactGTTCAGAAATAGCTTTACATAACACCGTGACCTGAAGCCAGCTCTGCTGTGACTGAATGTCTGCTCCGGCTTCTTCCTCCCAGAAGTCTCTGCTGTGGCTTATTTGCTTGACAGCAGTGGAGGCGGAGGAGGTGTCGGTTCCCCGGTGTTGCAACACCTCCGCTCGGCGTCGTGAGCGCTTACGTCGGGCTGCTCATGGTGAAATAATCCCGTTTAGGTGTCTTTTCTTGCCGAGACGAGATGCGGCGGTACCTGCGTGTGCTGCTCGTCGGCACGGTGCTTGTTTTCTGCTCCGTGCTGTACGTGTTCAGCCAGCTCGCCTCCTCTCTGGAAGCCCGGGCCGGGGGACAGGGGAGGAAGGCGCCGCACGGAGCCGCTCTGCTGCAGGGGCGCGGCGGGCAGCGCGTCAGGAAAGGGGCGGGAAGCGCAGGCCCGGAGGACCCTCGGTGGGGCGACAGATACGCTGTGCGAGAGCCGGGCTCTGCGGGCGCTTCAAAGGGTCCCACCGAGCTGATGCACCTCGCTGTGGTGGCGTGTGGCCAGAGGCTGGAGGAGACGGTGACCATGCTGAAGTCTGCTGTCATCTTCAGCATCAAGCCCGTCCAGTTCCACATTTTCGCAGAGGACCAGCTACATGGCAGTTTTAAAGAAATCCTGGAATCCTGGCCCCGGCAGTTCCGCTTGAAGTTTAACTACACGATCTACTCCATCGCCTTCCCCAGCGAGAACGCCGCCGAGTGGAAGAAGCTGTTCAAGCCCTGCGCCTCCCAGAGACTCTTCCTGCCTATTATCCTGAAGGAAGTGGACTCCCTGCTGTACGTCGACACCGATATTTTGTTCCTGCAGCCGATGGATGAGATCTGGTCCTTCCTGTCCGAGTTCAACGCCACTCAGATGGCTGCCATGGCCGCAGAGCACGAGGAGCCTCGCATCGGCTGGTATAACCGCTTTGCCAGGCATCCTTTTTACGGCAGGACCGGAGTGAACTCGGGTGTCATGCTGATGAATATGACCAGGATTCGAGAGAAACATTTTAagAATGATATGACGACCGTCCTCCTTCAGTGGGAGGAGCTGCTGATGCCTTTGCTTCGGAAATACAAACTCAACATCACCTGGGGGGATCAGGatctattaaatataattttccacCACAATCCAGAGAGTCTCTTTGTGTTTCCCTGCCAATGGAACTACCGCCCCGATCACTGCATTTACGGCAGCAACTGTATCCCAGCTGAAGAGGAGGGCATCTTCATCCTTCATGGGAACCGCGGTGTTTATCACGATGAGAAGCAGCCCGCCTTCAGAGCCGTATATGAAGTCATTCGAAAATATGCATTTGAAGAGGACCCAGTAAACTCCATACTGAACCTGCTTGAAGAACGATTACTAAGGACAACACACACGTACTGTGGACGAGTGCAACACTTATTCACAAAGAAGCTACAGCACACTGTGAGGACTTTTCAAAACACGTTCCCGAGGGGAAGGTGATCTTTTAGGTTTATTTTCCAGGTACTTCCTACGTGGAATTTTCCCGTTAAGTGTAGGGCAGAATTCCTGAAGTTTGTGCCCACGACAGGTCAACAGTCTTAAGTGACGTGTCAGACTTTGCGGAGAAGAGTGGCTATGAAGACTCGGAAGTGGAAGAAAAACCTGCTGTGTTTTACTTGAAAAGCCGAGAAGTTCTTTAACCGAATGTCAGATTTTGATAGAAGCACTAATCTCACTTTGCTGTACAGAAACccttttgtttacatgaatgAGGTCTCGTGTTGTGACGGCAAGGAATGTCAGATTGAAACATTTGACGTTGGCtgtttcatgcttttaaatgtgactgaaatgttttgacAATCATTTAACTTTAGGTAATTTGGAAAAGATTACATAAGACATCGAGAGATGCAATGTTTTGCTCATTGTGGCAAACGAAGCCTTCTGTTACACTACAATAGAACTGCATCTTCCTTTGCTTTGAGGTATTATAATGAATGTCtctttttataatttaagtGCTGGCCAAGAGCAGGCCTTGTGAGCTACCATGGGAACCAAACCAACTGGTTTAAAATAAGAGAGAGCAGACTAAATTTATGAGAGTATTGTCAGAATTTGTTCAGTATGAAATGAATAATGGCTAAATGCAATTGTAGGTGTGTTATTGAATAATCACTTCAGATAATCACTCTGTTCTTTTGAAGAGTTCTGGTCCATTATGGACATTCATGTCTTTGTCAGCTATAACAGCTAGTGTGTAAACTAGCCTTAAGCAACTCCCTGCCCTTCCTGTAGAACAAAGTTAGAATTAAGTTATTGGAATAAAAGTTCCAATACTCGATCTTGTCAcgtagtttaaaaacaaatgtgtatattcaTAGTCCTTGTACTAAAcccattcaattatttaaatagtaaaaatagtaaaaactATTAAGGATGCACCAAAAATATGAGGTTATTAATGCTACAGACATAAAACGCAATGATTCCCATTTAGCAAGGCATTAAGTATTGATTTTAAGAGACTAAACTGGTTTCATGAGCCTGTCTCATCCATTTCAAaggatgacattttaaaaaccaaaaaaataaaaataaataaataccccaattatttttttaaacaaactgccTTAACATTTGCAGAAACCTTCTATGGATTGATCTGTATGCAAGTAGAGAGACCAGAGGTCCAGGTTTTGGAGCAGTAGTGAAGCTCAGTATGTAATTTTCTTCATCTCACACTGTAACCTGTGCTCCCCATGCTGTGAGCTAATATACAGCATCTTTCAGAATGTAACAGTTACCAAGAACGTGGTGTAATTTATGCCTGTCACAGGAGTCTTAATATTTAACCCgttttctttattgttattgtctttATTACTTTACAAAGTATGTTTAAAAGGGTCCAAGTCTCTTATGGTGTTCTGAATGCAGTACAAACTTATTCAATTTGCactaaatacaagtcaaagaaACCGTCTTAATGCATGTATATTAAagagattatttaaataattattttgagatCCATTCTCAATGATGAATTGTTCATTAGAGGGTGCTAGATTGCTCtggaattaataaaacaccactTAAGTCATTGCAATGCAACACAATTTAAGTGTAGTGGCAGACTGAGAAGGTGAATACTTGATTTAAAGAGCTGGGATGTTTGTGTATCTGTACAATAAATCTGGACATTTGGGGAAAGGGGAATATATATTGGTTATATGGATTGTTTTCTTGCTTCTTGTTTCTTGGATAGTACAgtttctgattttgtttcattaattgCTAATGCCAAAACGGAAAACATGTTGGTTGTTTGATCGGACCAGAATGTTTGTCAGTGATTTAGAATGTGCTTGAGGATCATAAATcacttattttaaatctaaCTGCGTAATAAACTGGAATATGGATGTAAAATCATAAGCAAATGGTTTAGGTTTTGATATGACCTTTTACCTcaatgtacacatttaattttatacttgTAAAAGTGACAATACTTTACATATGGaaactgcaatattatttttataataaacttTCAGAAATGTGGAGTCAA

Function

GO: NA

KEGG:

id description
K13676 GXYLT; UDP-D-xylose:beta-D-glucoside alpha-1,3-D-xylosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138511 lncRNA downstream 508918 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 591516 9476482 ~ 9477506 (-) True G110594
TU138472 lncRNA downstream 1054696 9010140 ~ 9014326 (-) True G110576
TU138400 lncRNA downstream 1274960 8783905 ~ 8794062 (-) False G110520
TU138203 lncRNA downstream 2159794 7907558 ~ 7909228 (-) True G110369
TU138671 lncRNA upstream 220097 10304931 ~ 10305247 (-) True G110720
TU138687 lncRNA upstream 336727 10421561 ~ 10470060 (-) True G110733
TU138722 lncRNA upstream 518261 10603095 ~ 10603733 (-) True G110757
TU138921 lncRNA upstream 1586735 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 1704106 11788940 ~ 11789234 (-) True G110939
AMCG00006572 mRNA downstream 443130 9624085 ~ 9625892 (-) True AMCG00006572
AMCG00006573 mRNA downstream 462597 9605538 ~ 9606425 (-) True AMCG00006573
AMCG00006570 mRNA downstream 476900 9588931 ~ 9592122 (-) True AMCG00006570
AMCG00006571 mRNA downstream 481516 9571489 ~ 9587506 (-) True AMCG00006571
AMCG00006562 mRNA downstream 871555 9195436 ~ 9197467 (-) True AMCG00006562
AMCG00006579 mRNA upstream 2441 10087275 ~ 10089638 (-) False AMCG00006579
AMCG00006578 mRNA upstream 25627 10110461 ~ 10115803 (-) True AMCG00006578
AMCG00006582 mRNA upstream 97343 10182177 ~ 10198686 (-) True AMCG00006582
AMCG00006584 mRNA upstream 291100 10375934 ~ 10385675 (-) True AMCG00006584
AMCG00006583 mRNA upstream 318740 10403574 ~ 10422520 (-) True AMCG00006583
TU138509 other downstream 516942 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1069758 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1274960 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 1344670 8722388 ~ 8724352 (-) True G110507
TU137983 other downstream 2980037 7078389 ~ 7088985 (-) True G110195
TU138641 other upstream 2444 10087278 ~ 10107285 (-) True AMCG00006579
TU139024 other upstream 1933048 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 2052348 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2791458 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2791458 12876292 ~ 12878656 (-) True AMCG00006641

Expression Profile