RNA id: AMCG00006586


Basic Information

Item Value
RNA id AMCG00006586
length 2684
RNA type mRNA
GC content 0.47
exon number 9
gene id AMCG00006586
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10506051 ~ 10511361 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTAAACCACGCTGTACGTGTCCAGCCTGAGCGGGATGCTAAGACCCAAAACACTCTCTGCGTACCAGTGTTTTGACGAAATGTACTAATGAATGGATAAAACACTTCTAAAGTAGGGTCTATATGAGCAGAACAGGCTTGAATAAGCAACAAAACAACTGCTCTCAAAATGGAGgatgaaagcaaagaaaactcCTGTACTTCTTCACTGTGCTGTATTAGCCATCACCCAGGTTTCAGGGGAAGCATAAAAAATTCAACAGCAGACTTTGTTGTGATAGAAATTAACTTGAATAATCAATGGGTAAATGTGGCACATTTATTGCCAAAGGTTTGCACCCAACAGTCTGAACACAGTGGACAGTGCCTGGGTGATAAATCAGAGGAGAAGACGGTGAAGCCTTTAAATAATATGCCAAACACAGGGGGGGAAATACAAATGGCACCTTACACTAGTGAGCCCTGTGACAGTGCGGACATGACTGTTGCCAGCGAGGAGTCTTTGGACCTGGACTTTATTTTGGACACTTCAGTAAATGAAGAGCTGATACAGTTTGCTATGATAACTAGATTGTGCGAAGACACAAGTGAAAAGTGTAGCAGTGCCGAACTATCGCTGGGCTCATACCCAGACAGAAACCAGAGAGCTAGTGTCCACCGCGCCGTCCGTCAGAGGTTCCCCTTCCTCATGACCATGACCAAAGGAAGTGAAATTCTAGTGAAGGAAGACCGCCATTATAAAGAGCTCTGCCGCCTGGTGTCCGAGGAAGAGTCCGAGGACTTCTTTAGGTTCTTAGATGCCAAAGTCCAAGATGCCACCTTCACATTTAAGCCAGATGATGATAAAGAGCACAGGAAAGCAGTCCATCATTTTGTCAGCAAACACTTTGGTAAGCTGGTGGAAACCAAGAGCTTCACTGCTGTGGACAGTGGTGGGCAACAAAAAGCCTCCATTACCGTGAGGTTTCGAGAAAGAAATAAGCCATCCAAGAAGAGGAAAGCTGCAGATACTCAGGAAGATGATGTTATATATACAGGTTTCACTCTACAAAAGGAAAACTTGGAAACATTAGAAGCAATAAGCTACTTGGCCAAAGCACTTGGTGTACTTCCCTCAGATTTCACTTACGCTGGAATCAAGGACAAGAGAGCCATCACATACCAGTCAATGGTGGTGAAGAAAGTCTCCCCAGAGAGGCTGAGGCAAATGAGCGcagagtttcagaagaaaggcATTCACATCCACCACATCCACCCCGTCTCACAGCCTCTGCGGCTCGGTCGGCTGAAGGGAAATCACTTTGACATCATTGTGAGGGATGTCAGGGCGCACTCCGGGGATTGCACCTCAGACCTGAAACAGCTGGTGCAGGAGGCACTGGACAATGTCAAGGCTAAAGGTTTTGTGAATTACTATGGGCCTCAGAGGTTTGGGACGGCACAGAGTGTTCAAGCAGACCAGATCGGACTGGCTCTGCTGAAGGAGGAGATGGTTATGGCTGTCAAGTTATTCTTCACACCAGAAGAAAGCAGTGACCCgcaaaataaagcaaagcaaCATTTCCTTCAGACGGAGGATGCGAAAGAGAGCCTGGCCCTCATGCCAGAGCACAAGGTCCGCGAGAGGCTGATGCTGCGGGCGCTGAACCGATACGGCGTGGGGCAGGAGGGCTGCACCCGAGGGTGGCTCAGCATCCCTCACAGCATGCGCGTCTTTTATGTCCACGCCTACTGCAGCCGGGTGTGGAACGAAGCGGTGGCCTTCAGACTGCGGCAGTTCGGCGACAGGGTGGTGAAGGGAGACCTGGTGTGGTCCGCCCTCGAAGACAAGGAAGGCAGTAAACCGAGTCTTTGTCAGGTTCATACCGTATCTGCTGAAGAAGAGGCAGAACACATTTACAAACTGCACCAGGTGGTCCTTCCAATGCCTGGCAACACCATAAAATATCCCGACAACAAAGTCGGCATCTGGTATCGAGAGCGGTTTGCCAAGGACGGGTTGCAGTCGTGTCGTTTCAGAGTCACGCCACTGAAGCTCAACATACCTGGATGCTATCGAGCGCTGTTGTCATACCCAAGAAAGGTAACTCACCACATACTGGAGGACTCTGTTGGAGCCATGAATGAGGAAACACCCGAGCAGGGCTCCCAGACATGCGGCCAGAGTCTCTCACCActcagtctgtctctgtcctttGACCTGGACCCCTCCTGCTACGCCACAGTGTATCTGAGGGAAATCATGAAATGTGATCCCTAAACCAGGAGAACACAGAACTGttgcaggatttattttgtgtatatgtttttctttatttcagagcattaatgttatttttcattaaactgtAGGACAGTGTTAATAGCCACCTGAAATGCCGTTTGTTCTCGGATCATTTATGTTCTGAAAATAAAGTCAgcattctatttttaatgtgtctTTGAAGGCTGGATTGaggttgttaaaaaaaaaaacatgaaaaccagAGTACAGCTTGGTTTCTCTTACCGAAACCTGATGAGTGTCTGTGGGGGTTGTGGTGCTGTTTTGTCCATTTATTTGTCAGCAGCTGCCAAACCTCAGTAAGACACACaaatcattatttgtaaaatggtTGTGTATATCTAAAGCAACTTTCAGGGATTACCAATtgccatgtatttttttattccagtgcATGCAG

Function

GO: NA

KEGG:

id description
K06176 truD, PUS7; tRNA pseudouridine13 synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138687 lncRNA downstream 35991 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 200804 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 945947 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1028545 9476482 ~ 9477506 (-) True G110594
TU138472 lncRNA downstream 1491725 9010140 ~ 9014326 (-) True G110576
TU138722 lncRNA upstream 91734 10603095 ~ 10603733 (-) True G110757
TU138921 lncRNA upstream 1160208 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 1277579 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 1278691 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 1283175 11794536 ~ 11796342 (-) True G110942
AMCG00006585 mRNA downstream 38345 10444225 ~ 10467706 (-) True AMCG00006585
AMCG00006583 mRNA downstream 83531 10403574 ~ 10422520 (-) True AMCG00006583
AMCG00006584 mRNA downstream 120376 10375934 ~ 10385675 (-) True AMCG00006584
AMCG00006582 mRNA downstream 307365 10182177 ~ 10198686 (-) True AMCG00006582
AMCG00006578 mRNA downstream 390248 10110461 ~ 10115803 (-) True AMCG00006578
AMCG00006587 mRNA upstream 9951 10521312 ~ 10527300 (-) True AMCG00006587
AMCG00006588 mRNA upstream 40067 10551428 ~ 10551733 (-) True AMCG00006588
AMCG00006591 mRNA upstream 128297 10639658 ~ 10653405 (-) True AMCG00006591
AMCG00006592 mRNA upstream 192712 10704073 ~ 10731630 (-) True AMCG00006592
AMCG00006597 mRNA upstream 250818 10762179 ~ 10816162 (-) True AMCG00006597
TU138641 other downstream 398766 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 953971 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1506787 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1711989 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 1781699 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1506521 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1625821 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2364931 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2364931 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2944071 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile