RNA id: AMCG00006589



Basic Information


Item Value
RNA id AMCG00006589
length 1063
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00006589
representative True

Chromosome Information


Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10593297 ~ 10617772 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TCCACACATGGTGACAGAGTACATGGGCATCAGGAACGAAAGTTTCATGAAAATAGCAGCAGTAGGAACCTGGATGGGAGACTTTGTGACTGCCTGGATGgtgactgatatGATGCTTCAAGATAAACACTACCCAGACTGGGGAAAAGCTGCCAGGAGATTTTGGAAACAGGGAAATAACAGAATTGTTCTCTTCTGGAGTGTCCTGATTTCTCTGACATCTGTAGTGGTTGTGGTCATCAGCACTGACTGGATCAGCTGGGACAACTTGAATCGGGGATTTCTGCCCAGTGATGAAGTCTCCAGAGCCTTCCTGGCATCTTTCATCCTGGTGTTTGACCTCCTAATTGTGATGCAGCTACCTGTATGCACCAGTATTTTCAAAGAAGAGTATCACATACACATCACAGGAAAATGGTTTAACTATGGGATAATTTTCCTGGTATTGATTTTGGATTTGAACATGTGGAAGAATCAGATCTTTTACAAGCCCTACGAATACGGGCAGTACGTCGGCCCGGGCGAGAAGATCTACACGGTGGAGGACCCCGACACCTTGAGCCAATTCAATAAGAGCACTCTGTCTTGGGAATGGAGATCCAACAACACCAATCCTAGATATAACGTGACCTACAGCAGCAGAGACATGTTCTTGCACAGCAGGTACGTGGGAGCCAGCCTGGATGTGAAGTGTCTCGCTTTCATCCCCAGCCTGGCCGCGTTCGCTCTCTTTGGATTCTTCATCTGGCTCCTCGGGCGATTCCAGGACAGCGAGCAGGGCcccaaaaacaaagacaagacCTACGAGAGGATAAAGCGGAAATCCCCATCCGAATACAGCAAGGATATGGGCGTGACTCCAGAGGAGGCCAACGTTACACTGAACGAAGCCTTAAAAAGCAATAATCCCATGCTTCTCTCAGTAGACACTCCTAATATGGGCTGCAGTAGTTCTACCTCCCATTCGTCACCAGAAACTCAAGAGAGTCACCCTAACATTGTGATTGACAGTGTGGACCCGGTGGAACCAGAAGTCTCCATTGATGTTTGCAAACCATCCCCT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU138673 lncRNA upstream 223366 10369715 ~ 10369931 (+) True G110722
TU138618 lncRNA upstream 561451 10030426 ~ 10031846 (+) True G110681
TU138486 lncRNA upstream 1136386 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 1704805 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 1797966 8795060 ~ 8795331 (+) True G110523
TU138835 lncRNA downstream 502618 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 732112 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 1053797 11671569 ~ 11672448 (+) True G110916
TU138936 lncRNA downstream 1175396 11793168 ~ 11793535 (+) True G110930
TU139023 lncRNA downstream 1405038 12022810 ~ 12024549 (+) True G111008
AMCG00006590 mRNA upstream 74439 10512172 ~ 10518858 (+) True AMCG00006590
AMCG00006581 mRNA upstream 413454 10159993 ~ 10179843 (+) True AMCG00006581
AMCG00006577 mRNA upstream 609070 9968172 ~ 9984227 (+) True AMCG00006577
AMCG00006576 mRNA upstream 740969 9850650 ~ 9852328 (+) True AMCG00006576
AMCG00006574 mRNA upstream 753433 9806029 ~ 9839864 (+) True AMCG00006574
AMCG00006596 mRNA downstream 143396 10761168 ~ 10763850 (+) True AMCG00006596
AMCG00006595 mRNA downstream 168488 10786260 ~ 10818604 (+) True AMCG00006595
AMCG00006593 mRNA downstream 210543 10828315 ~ 10829509 (+) True AMCG00006593
AMCG00006594 mRNA downstream 238273 10856045 ~ 10873557 (+) True AMCG00006594
AMCG00006601 mRNA downstream 498788 11116560 ~ 11119469 (+) True AMCG00006601
TU138516 other upstream 1025946 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 1869231 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 2416511 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 2938103 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 3681043 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 2393412 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 10319725 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 10430564 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 10525093 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 13414341 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile