RNA id: AMCG00006591


Basic Information

Item Value
RNA id AMCG00006591
length 816
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00006591
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10639658 ~ 10653405 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGATATTGATGAATGCTCCAACGGCTTTGTCGAGTGTGACAGTCGAGCCAATTGCATCAACCTGCCGGGCTGGTACCACTGCGAGTGCAGGGATGGATACCACGATAACGGGATGTTTCTGCCCAATGGGGAGTCGTGCGAAGACATTGATGAATGTGGGACTGGGAGAAACAGCTGTGCCAATGATACCATTTGCTTCAACTTGGAAGGTGGTTATGACTGCAGGTGCCCACATGGGAAAAACTGCACAGGAGACTGCATCCATGAAAACAAAGTCAAACATAACGGCCAGATCTGGGTCTTGGAAAATGACAGGTGTTCTGTTTGTTCATGCCAGACCGGCCTGGTCATGTGTCGGCGGATGGTGTGCGACTGCGAGAACCCAACCGTCGACCTCTTCTGTTGCCCCGAATGTGACCCTCGGCTGAGCAGCCAGTGTCTCCATCAGAATGGAGTCGTGGTCTACGGCAGTGGAGACACCTGGTTACAGAACTGCCAGCAATGTCAATGTCTGCAGGGAGAGGTGGATTGCTGGCCACTCTCCTGCCCCGCCATCGAGTGCGAGTTCACCGTCATTCCCGAAGGAGAGTGCTGCCCACGGTGTGTCTCCGACCCCTGCCAGGCAGACACCATACGCAATGACATCACCAAGACCTGCACCGATGAGCACAATGTTGTCCGCTTCACCGGCTCCTCGTGGCTGAAACACGGCACAGAGTGCTCACTCTGTCAGTGCAAGCCACCACCACCGTGTGCTCTGCGACTGGGAGAAGATGGCCTCAAGTGTCACTTCTTCTGCCTGCTGGCTTGA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 35925 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 169598 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 334411 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 1079554 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1162152 9476482 ~ 9477506 (-) True G110594
TU138921 lncRNA upstream 1018164 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 1135535 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 1136647 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 1141131 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 1246558 11899963 ~ 11902168 (-) True G110957
AMCG00006588 mRNA downstream 87925 10551428 ~ 10551733 (-) True AMCG00006588
AMCG00006587 mRNA downstream 112358 10521312 ~ 10527300 (-) True AMCG00006587
AMCG00006586 mRNA downstream 128297 10506051 ~ 10511361 (-) True AMCG00006586
AMCG00006585 mRNA downstream 171952 10444225 ~ 10467706 (-) True AMCG00006585
AMCG00006583 mRNA downstream 217138 10403574 ~ 10422520 (-) True AMCG00006583
AMCG00006592 mRNA upstream 50668 10704073 ~ 10731630 (-) True AMCG00006592
AMCG00006597 mRNA upstream 108774 10762179 ~ 10816162 (-) True AMCG00006597
AMCG00006598 mRNA upstream 224310 10877715 ~ 10892122 (-) True AMCG00006598
AMCG00006599 mRNA upstream 254292 10907697 ~ 10917640 (-) True AMCG00006599
AMCG00006600 mRNA upstream 281992 10935397 ~ 10944809 (-) True AMCG00006600
TU138641 other downstream 532373 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 1087578 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1640394 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1845596 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 1915306 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1364477 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1483777 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2222887 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2222887 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2802027 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile