RNA id: AMCG00006592


Basic Information

Item Value
RNA id AMCG00006592
length 1347
RNA type mRNA
GC content 0.49
exon number 12
gene id AMCG00006592
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10704073 ~ 10731630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGATTATTAAAAGTCActtttgtgctgtgtgtcttCGGCATCTTCTCAGGGCTTGGGGTCGACCCTGCTGTGCAGATCGACGTTTTCAATGAGCTGAAGCTGGAGTCGTTGGCTGGACTTTCGCAGGTCCAGGGTTTCCACAATGAGAGCAGAGCATTTCTCTTTCAAGATACATCAAGGAATATTAAAGCATCCCCAGATGTTGCGGAACAGATGCTGAAGAAATTAAGGAACAAGAATGAGTTTACAGTCCTAGTAACTCTAAAACAGGAACGGCTCAATTCTGGAGTCATTTTATCCATCCATCACTCAGATCAAAGGTACCTTGAGCTGGAGAGCAGTGGCCACCGCAATGAGATCCGGCTGCACTACCGCACACAGAGTCAACAGGCACACACGGAGATCTTTCCCTATACCTTGGCAGATAATCAGTGGCATAAAGTGTCCATCGCCGTGAGCGCGTCCCATGTGATCTTACATGTAGACTGCAACAGGATCTATGAAAGGGTGGTGGAGGCACCATCAATGGACATTCCCAGTGAGACGTCCTTCTGGTTGGGCCAAAGGAACAATGCCCATGGCTCCTTTAAGGGGATACTGCAAGATGTTCAGGTGCTGGTTATGCCTCAAGGTTATATTTCTCAATGCCCAGACCTTAACCGCACATGTCCTACTTGCAATGACTTCCATGGGCTggtacagaaaataatggaacTGCAAGACATCCTAGCAAAGACATCAAGCAAGCTGTCCCGAGCCGAGGAAAAAATGAATAGCTTGGAACAATGCTATTGTGAGAGGACGTGCAACATGAAGGGGGTCATCTACAGAGAGTTCGAATCGTGGACAGATGGCTGTAAGAACTGCACATGCATGAACGGCACCGTTCAGTGCGAGACTCTGTCTTGCCCTCCTCTGCAGTGCTCCTCGGACTCGGCTCCTGCTTATGTAAAAGGCACATGCTGCCAGGAGTGCCAGCcGATTTGCTTATTCAATGGCAAGATGTTTCAAGATGGAGAAAAGCAGGCCGTGTTTGAGTCGTCCGGAAAGTGCATGTTATTTGAATGCAGAGATAGGACAATGCGTCGAATGAAAACTACAGGTTGCCCTGAACTAAAGTGCCTACAGTCGGAGCAGATTAAACTCACTGACAGATGCTGCAAAGTTTGCAAAGGTCATGACTTCTGTGCTGAGGGACACAGCTGTGTGGAGCACTCAGACTGTGTCAACCTGGAGGCCGGCGCCGGCTGTAGCTGCAAGGATGGATTCCGGGCCCTTCGTGAAGACAATGCCTACTGTGAAGGTATGGTGAGGGATACGTTGCTGCAAAATCATGTAGTTTAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K24342 NELL; protein kinase C-binding protein NELL

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 100340 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 234013 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 398826 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 1143969 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1226567 9476482 ~ 9477506 (-) True G110594
TU138921 lncRNA upstream 939939 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 1057310 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 1058422 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 1062906 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 1168333 11899963 ~ 11902168 (-) True G110957
AMCG00006591 mRNA downstream 50668 10639658 ~ 10653405 (-) True AMCG00006591
AMCG00006588 mRNA downstream 152340 10551428 ~ 10551733 (-) True AMCG00006588
AMCG00006587 mRNA downstream 176773 10521312 ~ 10527300 (-) True AMCG00006587
AMCG00006586 mRNA downstream 192712 10506051 ~ 10511361 (-) True AMCG00006586
AMCG00006585 mRNA downstream 236367 10444225 ~ 10467706 (-) True AMCG00006585
AMCG00006597 mRNA upstream 30549 10762179 ~ 10816162 (-) True AMCG00006597
AMCG00006598 mRNA upstream 146085 10877715 ~ 10892122 (-) True AMCG00006598
AMCG00006599 mRNA upstream 176067 10907697 ~ 10917640 (-) True AMCG00006599
AMCG00006600 mRNA upstream 203767 10935397 ~ 10944809 (-) True AMCG00006600
AMCG00006603 mRNA upstream 263008 10994638 ~ 11015369 (-) True AMCG00006603
TU138641 other downstream 596788 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 1151993 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1704809 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1910011 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 1979721 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1286252 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1405552 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2144662 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2144662 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2723802 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile