RNA id: AMCG00006593


Basic Information

Item Value
RNA id AMCG00006593
length 282
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00006593
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10828315 ~ 10829509 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atggcaaattcGACGGGGAAAAACCAACCCGACCAGCGAAGGAAAGGACTGGCTTTCCTGGACGAGCTGCGGCAGTTTCACCAAAGCAGAGGCTCCCCGTTTAAGAAGATCCCTGTCGTGGGTGGGAGAGAGCTGGATCTCAATGCTCTCTACACCAGAGTCACTACTTTAGGTGGATTTGCGAAGGTTTCTGACAAGAATCAGTGGTCTGAACTTGTGGAAGACTTTAATTTCCCAAGGAGTTGCTCCAAcgctgcttttgttttaaaacagtattaCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138673 lncRNA upstream 458384 10369715 ~ 10369931 (+) True G110722
TU138618 lncRNA upstream 796469 10030426 ~ 10031846 (+) True G110681
TU138486 lncRNA upstream 1371404 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 1939823 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 2032984 8795060 ~ 8795331 (+) True G110523
TU138835 lncRNA downstream 290881 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 520375 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 842060 11671569 ~ 11672448 (+) True G110916
TU138936 lncRNA downstream 963659 11793168 ~ 11793535 (+) True G110930
TU139023 lncRNA downstream 1193301 12022810 ~ 12024549 (+) True G111008
AMCG00006595 mRNA upstream 9711 10786260 ~ 10818604 (+) True AMCG00006595
AMCG00006596 mRNA upstream 64465 10761168 ~ 10763850 (+) True AMCG00006596
AMCG00006589 mRNA upstream 210543 10593297 ~ 10617772 (+) True AMCG00006589
AMCG00006590 mRNA upstream 309457 10512172 ~ 10518858 (+) True AMCG00006590
AMCG00006581 mRNA upstream 648472 10159993 ~ 10179843 (+) True AMCG00006581
AMCG00006594 mRNA downstream 26536 10856045 ~ 10873557 (+) True AMCG00006594
AMCG00006601 mRNA downstream 287051 11116560 ~ 11119469 (+) True AMCG00006601
AMCG00006606 mRNA downstream 476382 11305891 ~ 11321973 (+) True AMCG00006606
AMCG00006610 mRNA downstream 829378 11658887 ~ 11706824 (+) True AMCG00006610
AMCG00006609 mRNA downstream 905174 11734683 ~ 11735631 (+) True AMCG00006609
TU138516 other upstream 1260964 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 2104249 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 2651529 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 3173121 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 3916061 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 2181675 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 10107988 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 10218827 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 10313356 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 13202604 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1965163 True 1994 lncRNA 0.41 3 NC_048585.1 20356776 ~ 20359739 (-)