RNA id: AMCG00006595


Basic Information

Item Value
RNA id AMCG00006595
length 4933
RNA type mRNA
GC content 0.41
exon number 17
gene id AMCG00006595
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10786260 ~ 10818604 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGGCTCCGAGCAGTGCCGCTGCGGCTGCCATGGACCTGCAGGATAACAGCCACACCGCTTGATCGGCTGCTGTGCTGCGAGTCGGTCTGCCAGCTGCCGCTCACGATGAGTGAACACGAGATCTTGGAGATGGACTCGGACCCGGGCGACACGGAGCTGGTGGACGAGGAGCAGTtatacaGCCAAGATTTTCTAACAACCTATGCAGCAGTACGGGAGGGAGAAGGCATGTTCAAGACAGAAATGACGGAGTTCAACAATGAGACGGACTCTCTGTTCTTTGTTGATGGAAAAAGGAGGATTGATTTTGTGTTGGTCTATGAGGATGAGGAAAAGAAGGAATATGAGAAACGACAGGTACATCAGAGACGAAAAGTAGTGGatgaaaagattatttttgtgaagGTCCACGCACCCTGGGACGTCCTTTGCACATACGCAGAGGTGCTACATATCAAACTACCCATTGAGGCAAATGATCTGGCATCCAAAGAGTCCCCCTTCAACTGCTTTACCAAATGCTTCTACCCCAGCGAAGAACTGATCAAACCTGAGGCTGAGTATTTCACTGCCCCCTTCGAGAAGGACAGGATAGAATACTTCCACGTGACAGATCGCGATACGTTCTTCACTCCTTCCATGAGGAGCCGAATGGTATACTATATTCTCAGCCGTGCCCCTTATGAGGTGAGaggcaaaataacaaaatttgGCATCACCAAACTGCTGGACGGTGGTGTGTACAAGGCTGCCTACCCACTACATGATTGCAGATTCAATGTTAAGTCTGAAGACAAAAACTGCCCCAATGAACGCTACCTCTTGTATAAAGAATGGGCTCACCCTCTGAGCTTCTATAAGATGCAGCCTTTGGATCTAATAAGGAAGTATTATGGAGAAAAGATCAGCATCTATTTTGCTTGGCTCGGCTTCTACACAAAAATGCTGGCCTTCGCAGCAGTGGTGGGTCTCGGCTGCTTTATTTATGGATACCAAACCCAGGAGACGAGTACGTGGAGTCAAGAGGTGTGTGATCCTAACATCGGTGGCAGTATTATCATGTGTCCACAGTGTGACCAGGAATGCGCCTACTGGAGGCTAAACAGCACCTGCGAGTCCTCAAAGaaACTCTGCATATTTGACAGTTTTGGGACACTAGTTTTTGCCATATTCATGGCAATTTGGGTCACGCTATTCCTGGAGTTCTGGAAGCGGTACCAGGCCCAGCTGGAGTACGAATGGGACACGGTGGAGTTCCTGGAGCAGGAGGAACAGCCTCGCCCAGAGTACGAAGCCAAATGCGTTCATGATCGAGTCAATCCCATCACAAAGattttgctGATTATTGCTTCCGTTGTTGGGATTATAGTCTACCGCCTGGCTGTGTTCTTCGCTTTCTCTGCAAAACTGAGAAAAGCCACAAAGGAACTGGAGCCCTTCAGAGAGTACGTTACTCCCCAGAACGCCACTACAGTAACAGCCTCGCTCATCAGCTTTGTCATCATCATGGTCCTCAACATTGTCTACGAGAAGGTAGCAATCTGGATCACTGACTTTGAACTGCCCCGGACACAGACTGAATACGAGAACAGCTTAACCATGAAGATGTTTCTTTTCCAGTTTGTCAACTACTATTCTTCCTGCTTctacattgctttttttaaggGTAAGATCGTGGGTTACCCTGGCGATCCGGTCTACTGGCTTGGTAGATACAGAAATGAGGAGCCATCTGGAACAACATACAAGAAGTGCTGCTTCCTGATCCAGTTTGGTTTCGTCACCTTGTTTGTGGCCTCCTTCCCTCTGGCACCCCTCTTGGCCCTCCTCAATAACGTGTTTGAGATCCGAGTGGACGCCTGGAAGATCACCACACAGTTTCGCCGGGTGGTGCCAGAGAAGGCACAAGACATTGGAGCATGGCAGCCCATCCTTCAGGGCATTGCCATTCTGGCTGTGGTAACAAATGCCATGATCATTGCTTTTACATCCGACATGATCCCGAGATTAGTTTACTACTGGTCCTTCTCTGTGTATCCCTACGGAGAGCACCCAGACCACACCATGATGGGCTACATCAACAATTCCCTCTCTGTCTTCAGAATCAGTGACTTCTCCAATGAAAGCCTGCCCCTCCAGTATCGGGATTTTAGATATCCACCTGGACACCcaaaacaatatgaatacaGTATTTACTATTGGCATGTCATCGCTGCCAAACTGGCTTTCATTATAGTTATGGAGcaCATTGTCTACTTCACGAAGTTCATCCTGTCGTATATCATTCCGGACGTACCTATAGAAGTAAAAGAGCAGATCAAACGGGAGAAATACTTAACCCAGAAGCTGCTTCACGAGGCCAGCCTGAAACTGGTGACCAGACGCATGAAACCCATTACTGACAAACTACTCAAACGCTCAGATGGAGACTTTAAGTTAATCACCGAAAGCAGTGAATAGCAAAGGAGAAGAGCCCTCGGCTTTCGGActctgaaaaagagaaacacagtcGTCTGCCttaattactattttatatttgtccacagatcaaatatttgttttatattttatttttgtattgtatagatgttgatatgcattgttttatttcaagtcCAACCCAGTCATTTGTCAGACACgtccaatatgtttttttaaagggggaACATACAACATTGTTTGCAAAGTAACTTCTCGATTGGATTACACAATAAACTCCTATCAGAGGATTCCTATGAAAGGTATCTTCCCTCTTAAGAATGACACACGAACCTGTCATCTTGCCCCTTTTGAAAACGATGCCATGCTGTGCATCCTGTTACGTTTCTGTGAAGTCGCACTTTTGTTTCATAAAAGCTGACGGGCAAAAATAAGTACAGCTTTTTAGGAAGTTACTACAAGAGGGGGTGGTGAGAGCCAGTCAGAGCCACATGCCACAATTCACATGACTCTTTAACTATTACAATGAATGTTGCGACAATCACTTAAACTAATGTCTATCGATTTAACATATCCCGTTACTTTATTATTTGGTGTTTTGGCTACAAACTTCTAGAAGATTTTTACAACAAAGTATTCCTAACACCTTGCACGAAAATAATAGAATGAAAACTTAATTGCTAGGAATCATGATGCAGGCTTcttgttgaattgtttttatagaaataaTTTCTTAAAACGTAACTAAGAAGCTgtgaacatatatttttaatctatttggaaaaatgtcagaaaatgtatttagaaaaataaaccatgtcATCCGTTATTTCAGCAGTGTGGTATTATTCAGTTTTTGTCCCCTTTATAAAAATCGTTGATAATACTCGGGTCTAATATAAGACATAATCCGTTTATgctaaatgtgtttgtgtaatgtTGTGGGCTACAACAATGTATTGTGATACATTGCTCTAAGGCACTTTgagttttacattacatttgtataaagCCTTTCAAGCTCCAcatctattttttgtttcccaAAATGATGACCATAATAATATCATAGTTTTCTTGAATAATCAAAATTCAATTTGCcgcctttttttttatttttttaaatttattttgtgtttgaagtgTGGATTTTGCAGAAGATTTTGTGAATGCTAAACCAAACTATGTATGCAAAATTATCCGCATACTATCAATTATGAGACGGCAGGCACGAATTCAAAAATTCCACCTTCATTATTCAAAAATCAGTGTCCTTCTATGCATTGAAGTGGTTTGAAGAGACAAAACCACCAATATTCTGATGGCAATGACGTAATGCTGAAATGATCATATAATACTTACAGAAATCTGTTTTGCGGTTTTTGAGATTGAGATGACATTTTTCTTGATGTAGACAGTAGTTGCACAGTAAATATACATTAGAACAGGCcagttgaaattaaaatatttatatcacAATTGGGAGTTTGAAGAGTGCCAACCAGTGTTATCCTGGTCTCCAGGTTGGGATCTTTTGGATGTTTTTTATAGTTAATTGAATAGAGCTAAGTCCACCATGTAGGGAATGTACTAATGGTGGGGAGCATTGTAACTGCATCATTAGTTTACACGACTGCTGCAATGTAATTGTACTGAAAGGACTcctggtttatttattgttcattcTTATATTTCTAAAGAACTGCCAGCCATTAATGCTGTGTGTAACAGGTGTCATCTGTTTAGTGTAGAACTGTTTTTGGTCCAGTATATGAATGCTAAAAGGTTCTGgcaaatcacaaattaacaGAGAACGAAGTTACATGTTTGCCAGCTGATTTAAAGTCAAAATTATATGCAGAATgcatcaaataaaacaagaagTATAACGCTTTTCCACATTGTGTACACCTAACTGCTAACTGCCAGCTGCTCTGGTTTCCATGTTTGATTGGGTGACTTTTTCTTTAGATGCCTATATTCACATTGCTTGTGGTTTCAGAATGAAATAACTGTTGTAAGTCTGTTTTTGTCTCATATTCCATTCTCTCTCACCCGATCCTTTAATGACCAGTTACTTCACTGTTTTGGTTTAGAAGTAATCAGTTTTAGCTTATTGGAGTGAGGAATTTTGCCAATGAAATCCATATCCCCTAAACTGAATGTGAACAGATTTTggaaagtgtgtgtatatatatcatatatattattctacATATAAAGCAgcatatatatgcaaattagATATTAATTCCTAAGTGCCTTTTACATAATGTCATTAAAGTGCTGCATTTCACATGTATTTTACCTAAAATGGCCCTTGCCACTTGTACGATCTGTGTGCCATATTGGTTTATTAAATGATGCCTGTGTATATCCTGTCTGTCTACTTCCTGTAACCACTGTTGATTATGCTGTACTTGGCGTACACAGTATGCATGTCTGTTACACAACCAATAACCCTCATTATTAAACCTGTGGTTATTCATTA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19500 ANO6, TMEM16F; anoctamin-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138673 lncRNA upstream 416329 10369715 ~ 10369931 (+) True G110722
TU138618 lncRNA upstream 754414 10030426 ~ 10031846 (+) True G110681
TU138486 lncRNA upstream 1329349 9456665 ~ 9456911 (+) True G110590
TU138446 lncRNA upstream 1897768 8887686 ~ 8888492 (+) True G110558
TU138404 lncRNA upstream 1990929 8795060 ~ 8795331 (+) True G110523
TU138835 lncRNA downstream 301786 11120390 ~ 11120735 (+) True G110849
TU138877 lncRNA downstream 531280 11349884 ~ 11350117 (+) True G110883
TU138920 lncRNA downstream 852965 11671569 ~ 11672448 (+) True G110916
TU138936 lncRNA downstream 974564 11793168 ~ 11793535 (+) True G110930
TU139023 lncRNA downstream 1204206 12022810 ~ 12024549 (+) True G111008
AMCG00006596 mRNA upstream 22410 10761168 ~ 10763850 (+) True AMCG00006596
AMCG00006589 mRNA upstream 168488 10593297 ~ 10617772 (+) True AMCG00006589
AMCG00006590 mRNA upstream 267402 10512172 ~ 10518858 (+) True AMCG00006590
AMCG00006581 mRNA upstream 606417 10159993 ~ 10179843 (+) True AMCG00006581
AMCG00006577 mRNA upstream 802033 9968172 ~ 9984227 (+) True AMCG00006577
AMCG00006593 mRNA downstream 9711 10828315 ~ 10829509 (+) True AMCG00006593
AMCG00006594 mRNA downstream 37441 10856045 ~ 10873557 (+) True AMCG00006594
AMCG00006601 mRNA downstream 297956 11116560 ~ 11119469 (+) True AMCG00006601
AMCG00006606 mRNA downstream 487287 11305891 ~ 11321973 (+) True AMCG00006606
AMCG00006610 mRNA downstream 840283 11658887 ~ 11706824 (+) True AMCG00006610
TU138516 other upstream 1218909 9566213 ~ 9567351 (+) False AMCG00006565
TU138383 other upstream 2062194 8722450 ~ 8724066 (+) True AMCG00006552
TU138304 other upstream 2609474 8175760 ~ 8176786 (+) True G110445
TU138093 other upstream 3131066 7653672 ~ 7655194 (+) True G110279
TU137929 other upstream 3874006 6911876 ~ 6912254 (+) True G110163
TU139270 other downstream 2192580 13011184 ~ 13043448 (+) True G111197
TU140941 other downstream 10118893 20937497 ~ 20938170 (+) False AMCG00006811
TU140974 other downstream 10229732 21048336 ~ 21049038 (+) True G112567
TU141018 other downstream 10324261 21142865 ~ 21203201 (+) True G112600
TU141703 other downstream 13213509 24032113 ~ 24036112 (+) False AMCG00006878

Expression Profile