RNA id: AMCG00006597


Basic Information

Item Value
RNA id AMCG00006597
length 1707
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00006597
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10762179 ~ 10816162 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCGAAAGCCGAGGGCTCTTCTCCTTTGCTATTCACTGCTTTCGCCAGAATGGCAATGCCCTGAAGGATGGGCTGCCATGCTCCAATGTCTTGTGCCTTCTCTGGCACCACCCGGCGAAACTGTGTGGTGATCTTCCAGGCGTCCACTCGGATCTCAAACACGTTATTGAGGAGGGCCAAGAGGGGTGCCAGAGGGAAGGAGGCCACAAACAAGTTTACCTGGCCACCATGACTCTGAAACGGCAAAAAGAGGGAATTGAAAACTCTGCTCACCTCCTCATTTCTGTATCTACCAAGCCAGTAGACCGGATCGCCAGGACAATGTTGAGGACCATGATGATGACAAAGCTGATGAGCGAGGCTGTTACTGTAGTGGCGTTCTGGGGAGTAACGTACTCTCTGAAGGGCTCCAGTTCCTTTGTGGCTTTTCTCAGTTTTGCAGAGAAAGCGAAGAACACAGCCAGGCGCGGCTTCATTGACGAAGAGGAGAATGAAAGCCCTGCCAACGTGCTTTCTGAACTCACCATTCGGCTCCTCATGGAAGGAGTGAAGAACGTATCGCGATCTGTCACGTGGAAGTATTCTATCCTGTCCTTCTCGAAGGGGGCAGTGAAATACTCAGCCTCAGgtGTGCTACTACACGCCAGGTCTCTGTCCCAGCTGCGGCCACAACCCGGCGCACCAACTTCACTCGCCCCGGAGGAAAACTTGCCCAACAAGCACTCACACTGCTCCTCGTCCACCAGCTCCGTGTCGCCCGGGTCCGAGTCCATCTCCAAGATCTCGTGTTCACTCATCGTGAGCGGCAGCTGGCAGACCGACTCGCAGCACAGCAGCCGATCAAGCGGTGTGGCTGTTATCCTGCAGGTCCATGGCAGCCGCAGCGGCACTGCTCGGAGCCTGCAGGGCGAGCGGGAACTGTGTCAGATGCGcagtctcctcctccagacgcTCCCCacttTAACATTCTCAAAACTGAAAGTCCAGAAGAAAACGACACTTCCAGCAGCTTCagaaaCGGGCAGCATGATCCCAAACCAGAACCTGAACTGGGAAATGGCAGGCGCTGCTGCCTTACTCAATGCACCCAAACCTGCAGGATTTGGGAACTCTGGGAAGAGTTTTCTTATTGACAATCTGCTCAGATCAGGGGCTTCTCAGACTGTCCCCTGGGTGCCTGCAAGTCCCGTGCCAGTGAAACTGTGTCCAAATGTGGAACAAAGCAGCCCAACAGGAGGTCCATATAGTACAAGATGGGTTTCCCGACTTGTTAACCCCGATGACAGGGGCTGCGTCCACTCTCCAAGCAGGGAGCTTATCTTGCATCCTCAAACAGCTCTGTTGACGAGTTTCTTTCCAAGGGGTCCACAGTTTCTTCTGGCATGCTGTGGTGGGTCCTGCCCCCCCCCTGCCTCCCCCACTGCTTTTTCAAAAGGAACAAGTAGCATGACACTGTGGTCCCAAGACACAAGTATCAAATCACGCAGAGGCATCCTGAGGAGAGCGGTCTTCTCCGAGGAACAGAGGAAGGAGCTGGAAAAGACCTTTGAGCGACAGAAATACATCAgcaaaacagacagaaacaaaatggcaaCTCATCTTGGACTAAAAGAATCTCAGCTCATGCACCATGTCACTCATCTCCAGAGCCTTGTTGCTGCTGAAGTTGGTGAACTCTTCGTTGTGAGCGATGCTCTGATGAAACTG

Function

GO: NA

KEGG:

id description
K24875 DBX; homeobox protein DBX

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 158446 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 292119 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 456932 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 1202075 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1284673 9476482 ~ 9477506 (-) True G110594
TU138921 lncRNA upstream 855407 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 972778 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 973890 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 978374 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 1083801 11899963 ~ 11902168 (-) True G110957
AMCG00006592 mRNA downstream 30549 10704073 ~ 10731630 (-) True AMCG00006592
AMCG00006591 mRNA downstream 108774 10639658 ~ 10653405 (-) True AMCG00006591
AMCG00006588 mRNA downstream 210446 10551428 ~ 10551733 (-) True AMCG00006588
AMCG00006587 mRNA downstream 234879 10521312 ~ 10527300 (-) True AMCG00006587
AMCG00006586 mRNA downstream 250818 10506051 ~ 10511361 (-) True AMCG00006586
AMCG00006598 mRNA upstream 61553 10877715 ~ 10892122 (-) True AMCG00006598
AMCG00006599 mRNA upstream 91535 10907697 ~ 10917640 (-) True AMCG00006599
AMCG00006600 mRNA upstream 119235 10935397 ~ 10944809 (-) True AMCG00006600
AMCG00006603 mRNA upstream 178476 10994638 ~ 11015369 (-) True AMCG00006603
AMCG00006605 mRNA upstream 235890 11052052 ~ 11052897 (-) True AMCG00006605
TU138641 other downstream 654894 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 1210099 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1762915 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 1968117 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 2037827 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1201720 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1321020 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 2060130 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 2060130 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2639270 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile