RNA id: AMCG00006599


Basic Information

Item Value
RNA id AMCG00006599
length 2139
RNA type mRNA
GC content 0.37
exon number 8
gene id AMCG00006599
representative True

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 10907697 ~ 10917640 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgcAGAGCAAGTGCACGATTTCCAAGTTGAAGTATCAACTGTTACTTTTTCCAGTACAAataaattcatataaaatgaGAAATGGAGTGGTTTACTCGGCAGAGTTGCAGAGCTTTGATAATGCAGACGAAGATGATCTGGAGGACAGCCAGAAAAGTGCACTTGAAATggacttagaggaggaggaggaggaagtgtTTGAGAGTCAAGCAACCCTTACAAAATTGCACTCGAAGCACACGAAGGCCTGGTATGTTGATGGAAATAATCTTATTGTTATTGTCACTATTGCTGTCATCCTACCACTGTGCCTTCTGAAGACCTTAGGGTATCTTGGATACACTAGTGGATTCTCCTTAGGATGTATGGTGTTCTTTCTATTTGTGgtTATCTTCAAGAAATTTACATTGCCTTGCCCTGGCATTGAGCTGAATGTCACTCTTGTGACCCATAACGAAACATGTGAAGAGTCATACATATCATTTAACAGCAAGGTGCGTTCCTCTGCTCTGGAGCTGATGAAGCAGAAACAGTTTAAGTGGAGCTTGCACATTGGGGTCACGTTTATTCTTTTGGCGTTATGTGTGCTTCTGGTCATCTTTATACCTTCAATCAAAGACATATTTGCTGTTATAGGTGCAACATCGGCCAATATGCTGATCTTCATTCTGCCGGCAGCAATATATCTGAAACTTAATGATTCCCTGCCTTTTAAAAAGAGGATAATGCCCATTCTTTTCTTGACAGCCGGAGTCATCAGCGCTCTTATCACCGTGCCGTTGGTGATCATCGACTGGGTTCACACAGTGCAGAACAACGAAACCACTGCGCACTGAAACTGATCCGCACGGCCAGATGACAAGAAAACATTCCTAAAGacttgacaaatatatattgtaatgcagGCTATACATCAACAACCTCAACTTAACTCACCATTTCTCAAATACGGTTCTAAAGTACACTgaactaaaattaaatgaataatataataattttatttaactgatCGGTGAGTATGGTAGTTTGAAAACACAGGAGGACGAACATACATACGATCGAGATACAACCTTAGTTTTCCTGCTGTTGTAGGCATGTCTTGTAAAATATGTTAACTTCCTAATGGAATGAAGAATAGTGCTTTTGATGGGTTTCATGCTTTCCCTCAATAGCCAGTTACCACAGATCTGAGGTCAGACAAGGCTACGGCATAGTAGAATCTACAGTTGCTATGGTCAGCTTTGACCAATTTAGATGCCTTGACATCTTGAACGTATGTATGTTCCTCGTTATAAGTTCTTTActagaattattttaatgagaagGCAAACCTTCCCAATTGCTTGAACTTTCTAGAAATCGCATAATtcctgtgttttgatttgttgtatGCGATTTTATTCTGTCCATGTAATTAAACGTGCACAATCTCAGTGAATGGTTTTagcaaaacaatacatgcagaaatgtatatatgtacagtatgatATCACGTGATACATTTTAAGTTCTTAAGGTGCAGGCAAATCCATGTCTTTCCAATGCCAAATGGTTTTCACCTGTAGccttttttaaaattcagttcTAGTAATCCATTGAAACTTTTAGGATTACAGATAATTTTTAGTTGTGGTAGCTATAGAAACTCAGGAATTTATCACTGCCGCCCTGCAAAGACACAGACTGCTGGTTTCTGAGCTGCAATTCCAAAATATCTCCTTACACTCAGAAATGTACCCAATCATATCATTACTTTGTTTTACAGCTTCCGCATTATGTGCCATTACTTCATGCATCTGCCAATTTATtaagaaatattgtttttggtattggggttatttattggtttgtattttccacattttctttattgttgctgttttaaaaatagtgtaCTAATTGTATTCTATATAGGTgggtgtttgtgtatttatcagAAAgtcatgaatgtattttttaaagtaatatgttttatgatgtAATATTTGTAGTGTATTTGAGGAGATCTTCTTAAACAAGTGGGTAAAGTACACCGTTTTACCTGTATGGTCAttcagtatgtatatatttttaataaataaaaaattgccTATGACTGAactaatattttgttaaatattgagTAAATGAAGAATCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU138722 lncRNA downstream 303964 10603095 ~ 10603733 (-) True G110757
TU138687 lncRNA downstream 437637 10421561 ~ 10470060 (-) True G110733
TU138671 lncRNA downstream 602450 10304931 ~ 10305247 (-) True G110720
TU138511 lncRNA downstream 1347593 9545495 ~ 9560104 (-) True G110605
TU138492 lncRNA downstream 1430191 9476482 ~ 9477506 (-) True G110594
TU138921 lncRNA upstream 753929 11671569 ~ 11672483 (-) True G110917
TU138945 lncRNA upstream 871300 11788940 ~ 11789234 (-) True G110939
TU138946 lncRNA upstream 872412 11790052 ~ 11793501 (-) True G110940
TU138948 lncRNA upstream 876896 11794536 ~ 11796342 (-) True G110942
TU138964 lncRNA upstream 982323 11899963 ~ 11902168 (-) True G110957
AMCG00006598 mRNA downstream 15575 10877715 ~ 10892122 (-) True AMCG00006598
AMCG00006597 mRNA downstream 91535 10762179 ~ 10816162 (-) True AMCG00006597
AMCG00006592 mRNA downstream 176067 10704073 ~ 10731630 (-) True AMCG00006592
AMCG00006591 mRNA downstream 254292 10639658 ~ 10653405 (-) True AMCG00006591
AMCG00006588 mRNA downstream 355964 10551428 ~ 10551733 (-) True AMCG00006588
AMCG00006600 mRNA upstream 17757 10935397 ~ 10944809 (-) True AMCG00006600
AMCG00006603 mRNA upstream 76998 10994638 ~ 11015369 (-) True AMCG00006603
AMCG00006605 mRNA upstream 134412 11052052 ~ 11052897 (-) True AMCG00006605
AMCG00006604 mRNA upstream 184445 11102085 ~ 11117866 (-) True AMCG00006604
AMCG00006602 mRNA upstream 296207 11213847 ~ 11231189 (-) True AMCG00006602
TU138641 other downstream 800412 10087278 ~ 10107285 (-) True AMCG00006579
TU138509 other downstream 1355617 9545495 ~ 9552080 (-) False G110605
TU138464 other downstream 1908433 8997637 ~ 8999264 (-) True G110570
TU138401 other downstream 2113635 8787818 ~ 8794062 (-) True G110520
TU138386 other downstream 2183345 8722388 ~ 8724352 (-) True G110507
TU139024 other upstream 1100242 12017882 ~ 12024548 (-) False AMCG00006618
TU139089 other upstream 1219542 12137182 ~ 12140393 (-) True AMCG00006625
TU139243 other upstream 1958652 12876292 ~ 12878656 (-) False AMCG00006641
TU139244 other upstream 1958652 12876292 ~ 12878656 (-) True AMCG00006641
TU139375 other upstream 2537792 13455432 ~ 13503228 (-) True AMCG00006663

Expression Profile